SimpleSearch - Line and FST details


Line specific information

 
Line ID 295B12
Vector Used pAC161
Line Availability available as T3 set from NASC (N428248)
Segregation Analysis 100:71:61
Confirmed for Hit At3g45443
Parent of DUPLO pair none
Parent of pair(s) none
Note

Gene hit At4g32980

 
Sequence (A. th genome BLAST matches underlined) 
>90-K015445-022-295-B12-8409
ACTTTGATCCATGTAGATCTTCCCTGTACATGAAGCCTTTACACTTGAATATATCCTGCG
GAATGAAAGTACACTGTTCTTTCACGGAGAAAGAAGATAAATAAGCATTATCTTCTTCTT
CAGTTTTTAACACACATTTTGGAAATTTTGATGTAAAAATTCTCTTTGGAACGTTGTGTT
GTCTGAAATCTTCCCAAAGGTTCTATCAGAAGAAGAAGGATAAAGGCAAGTTTCAACATT
TTTAATGTTCTATGGACATTTGTAGTAATCTAAAGCTTTCTTTTTTACTTATTAGTTCAC
TGTTTATCACAGATAGCTTTGAGATATTATTGGTCTGTGTATCATTGAGCCTATGGGATC
CT
GenBank Accession AL946255 [GenBank]
Graphic View Graphic view of gene At4g32980
Predicted Position of Insertion Chr4:15917375 - go to primer design
BLAST e Value 1e-167
Hit Clone Code (BAC ID) F26P21
Hit Gene Code At4g32980 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation homeobox protein ATH1
Insertion Classification TS2TE (5')
Confirmation Status failed

Gene hit At3g45443

 
Sequence (A. th genome BLAST matches underlined) 
>54-K118365-0022-295-B12C-35St
TTCGCAGACCCTTCCTCTATATAGGAAGTTCATTTCATTTGGAGACGATTGGGTACCCGG
GGATCAGATTGTCGTTTCCCGCCTTCGGTTTAAACTATCAGTGTTTATATTCAATTGTAA
ATGGCTTCGGTTTACAATTGATTTGTTTTTTGGTTCAACTCTCGTGTTATTTTATTATTA
CCTTAATTAATCTACCAGTTTACTTTTCATCTAATTATACTAAATCAACAGTCACTTTTC
CCAAAACTGCAAGTCTCTCCTTTTGCCATGTATGCTTAAGTCTAAAATTTTGGTCTTTCA
CATTCGTAAAACAATTCACTGCCTTCTACTATTATTTTTCAATCGCACTTGATGATATCC
TTCACGTAAATCAATCTTAGAGAAGACAACAGACCCTCCCAGTTCATCCATTAGATCTTC
AATAAGAGGAATTGGAAACCTATCTTTCACAGTCATTCCATTGAGTTCCCGATAATCAAC
ACATAAACGCCAAGATCCATCCTTCTTTTTGACTAGCACCACCGGTGAAGCATAAGGACT
AGAACTTACTTGAACTGTACCACTTTGTAACATCTCTTCAACCAACTTGTCAATCTCATT
CTTCTGGTGAATAGAGTACCGATAGGGTCGTTGATTAACGGGATTAGAGCCCTCCAACAA
CTCAATTTTGTGGTCATGTTGAGTCCGAAATGGAGGCAATTCAGTTGGTTCAGCAAAAAT
ATCAGGGAAGTCTTTGACAAGCTCCTCTATCTCCGTATCATCACCCTCCGTCTTTGCTAC
TGCATTCACAGAACAACTCAATCCCTGTTCCAACAACTCTTCTTCTGCTGGCACTTCACG
AACATACAC
GenBank Accession LN713413 [GenBank]
Graphic View Graphic view of gene At3g45443
Predicted Position of Insertion Chr3:16669668 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F9K21
Hit Gene Code At3g45443 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein
Insertion Classification Promoter
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL946254 [GenBank]


Last Updated on 10.06.2021 13:37