SimpleSearch - Line and FST details


Line specific information

 
Line ID 295G05
Vector Used pAC161
Line Availability available as T3 set from NASC (N428301)
Segregation Analysis 50:30:26
Confirmed for Hit At3g03150
Parent of DUPLO pair 12794
Parent of pair(s) none

Gene hit At2g27230

 
Sequence (A. th genome BLAST matches underlined) 
>39-K015440-022-295-G05-8409
CTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATATCCGTGAAAT
CCTTGAGAGCGGTCCGCTCGTAACCTCTATATGAATCAAGCTTTTAACCAGCCCGGTTTA
TTAAACCGGAGCAATCCGGTACGGTCAATAATTTGTGTCATTACATTGAACAGCCACCAG
TAACCGGTAAAGGCATTGTAGCTTTGATACCATCCAAAATAGTCTTAGAGTTTCCTCCAC
ATTTCATTGTCTGCTCCAAAATATTCACTAGGGGATTCTACTTTGAGCGAGCTCTCCTTC
TCATGAGGGACATGCTATGGTTCCGACGGCCGGTATTAGGACTAGCGCATATGCACCTGG
CATCTTGAGAGTTATGGGATGCATCTTATAGTGAGAGTTCTTTCTGTTTGAGGTAGTCAC
ATGGATGCTGACTCTGAATGGCTAAGGGAACATTCCTTTNAAGAGCGGGTGTGAATGACG
TAGCATGAGGATGATGGACT
GenBank Accession AL946335 [GenBank]
Graphic View Graphic view of gene At2g27230
Predicted Position of Insertion Chr2:11653944 - go to primer design
BLAST e Value 4e-118
Hit Clone Code (BAC ID) F12K2
Hit Gene Code At2g27230 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation transcription factor-like protein
Insertion Classification TS2TE (3')
Confirmation Status unknown

Gene hit At3g03150

 
Sequence (A. th genome BLAST matches underlined) 
>39-K015445-022-295-G05-8409
AATCTTTGATCCATGTAGCCTTTCCCTGTGACTGAANGCCTTTACACTTGAATATATCCT
GGATATCCTTTTCAGTCGTGACCGCCCATTTCACTTCTTGCTGCGTGCTCCATCTCTTCC
CAGCATGAGTAACCCGTTAGTCTTTTCATTTACTGATATGAGTATACCTGATGTAGGTTG
ATCTTCTCCTAGCGTCCGTTTAAGACATTAGTTCGTGACCGACCGTTCTGAATATATTTA
AATGTTGCTGGCACCTGACTTTGACATACTTCGGAGTATCTTCGTATGTGTTCCTACTTT
AAANGAGAAAGGCATTTACGGGGTCACTTTTTATGAAAAACCAAACTTTCCATCTTTAAT
AATATACTAAGACCTGATAAAGAAAAAATCTATATAAAGACCATCTTCGTAATAATTCAT
TCTTTTNTGGGGTTGTTG
GenBank Accession AL946336 [GenBank]
Graphic View Graphic view of gene At3g03150
Predicted Position of Insertion Chr3:728300 - go to primer design
BLAST e Value 3e-63
Hit Clone Code (BAC ID) T17B22
Hit Gene Code At3g03150 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37