SimpleSearch - Line and FST details


Line specific information

 
Line ID 297B10
Vector Used pAC161
Line Availability available as T3 set from NASC (N758529)
Segregation Analysis 100:74:68
Confirmed for Hit At5g67060
Parent of DUPLO pair none
Parent of pair(s) 11814

Gene hit At5g67060

 
Sequence (A. th genome BLAST matches underlined) 
>01-K107108-0022-297-B10C-3144
CCTTCGCAGACCCTTCCTCTATATAAGGAAGTTCATTTCATTTGGAGAGGACAGGGTACC
CGGGGATCAGATTGTCGTTTCCCGCCTTCGGTTTAAACTATCAGTGTTTGATCGGTGGAG
GTGGAATGACGGCGGCGAGTGGTGGTGGTGGCGGCGGGGGAGTGGTTATGAAAGGGTGTG
GAACAGTGGGGACTCATCAGATGGTGGGCAATGCACAGATTCTTAGATGATGATGATTTT
TAATTTTATTATTATTATATTAATGTTGGAGAAAAAGAGAAAAATGATTCTGGAGAGGGA
AGCCAAGTAATTTATGTGAGAGTCTTTAATTTAACTTTATTTTCTTGTTTAGATAATGTG
TAATGATGGTTTTTAAAGCCAAAGACTCTCCATGGTTGTTGGAGCGAGTTTGTAAATTAG
G
GenBank Accession HG968880 [GenBank]
Graphic View Graphic view of gene At5g67060
Predicted Position of Insertion Chr5:26766878 - go to primer design
BLAST e Value 4e-178
Hit Clone Code (BAC ID) K8A10
Hit Gene Code At5g67060 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL946519 [GenBank]

Gene hit T32B20

 
Sequence (A. th genome BLAST matches underlined) 
>74-K015553-022-297-B10-8409
TGTAGATTTCTCCTAATAGACTGCATCCTGTTTCTATATAAAAACTTACATAATGAATTG
CTATTCATCGAGACATAGAAGCTGTATCCATCTTCATACCCACCAGGAACAAACACGCTG
CAAAATCCGAATCACTACTCTGCTTATATCTCTCCCTTCTATGCCTATGGGATCTCTCCA
TATAGTGAGAAAACAATATATGAACCAGGTAAAAATGTTTTCTGGGTCCGCCACTGCTTA
GCACAAGTATAACACAAAATACACTATGGGATCC
GenBank Accession AL946520 [GenBank]
Graphic View Graphic view of sequence AL946520 of line 297B10
Predicted Position of Insertion Chr5:10790715 - go to primer design
BLAST e Value 8e-36
Hit Clone Code (BAC ID) T32B20
Insertion Classification Genome Hit
Confirmation Status unknown


Last Updated on 10.06.2021 13:37