SimpleSearch - Line and FST details
Line specific information
| Line ID | 298A05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N428517) |
| Segregation Analysis | 50:49:40 |
| Confirmed for Hit | At4g02590 At1g75850 |
| Parent of DUPLO pair | 2301 |
| Parent of pair(s) | none |
Gene hit At4g02590
| Sequence (A. th genome BLAST matches underlined) | >33-K015514-022-298-A05-8409 TTGATCCATGTAGAATTTCCCGGACATGAAGCACTTTTGTAGTTCTTCTCTGTTTAAGAC GTGCACTGAGGATAGCGAACGCAGCTCAACAAATGGCTATGGGATCCTCCCTATAGTGAG ANNNNNNNNANCNCTGTGATTCNGCTCTCTATGACACACCAAAATGTGAAAAGACACTAA ATGCCAAAGAAAACAAAAGCATTTTGGACTTGTTTATTCTTTCCCACATTAAATAACTGA TCTAATCAGATTGAAATTTGGTTGAAGGGTAGGTAATGGTGGGACCAGAATTAACACCAA AAATCCATCCAGAGAATTTGAAAGACATGATCTTTAGATCTCTAATCTTATGAACAAACA GACTAAACATATTGCATAGGGAGTAATACCATAATTCACAAGAAAGAGAGTTCGAGTTTA AAACTGCAGAAGAGAGAAGAATATACCTTGACTTGGAGCCTGAGAAACTTTACATAATCG ACAATCTCATCGATCATAGCAGCTCTATCGGTCTGCACACGAAGACGGGAGAAACAGAAA GTGTCAAACTTTCTATGGGATCCTCCC |
| GenBank Accession | AL946637 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr4:1138647 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T10P11 |
| Hit Gene Code | At4g02590 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g75850
| Sequence (A. th genome BLAST matches underlined) | >33-K015514-022-298-A05-8409 TTGATCCATGTAGAATTTCCCGGACATGAAGCACTTTTGTAGTTCTTCTCTGTTTAAGAC GTGCACTGAGGATAGCGAACGCAGCTCAACAAATGGCTATGGGATCCTCCCTATAGTGAG ANNNNNNNNANCNCTGTGATTCNGCTCTCTATGACACACCAAAATGTGAAAAGACACTAA ATGCCAAAGAAAACAAAAGCATTTTGGACTTGTTTATTCTTTCCCACATTAAATAACTGA TCTAATCAGATTGAAATTTGGTTGAAGGGTAGGTAATGGTGGGACCAGAATTAACACCAA AAATCCATCCAGAGAATTTGAAAGACATGATCTTTAGATCTCTAATCTTATGAACAAACA GACTAAACATATTGCATAGGGAGTAATACCATAATTCACAAGAAAGAGAGTTCGAGTTTA AAACTGCAGAAGAGAGAAGAATATACCTTGACTTGGAGCCTGAGAAACTTTACATAATCG ACAATCTCATCGATCATAGCAGCTCTATCGGTCTGCACACGAAGACGGGAGAAACAGAAA GTGTCAAACTTTCTATGGGATCCTCCC |
| GenBank Accession | AL946637 [GenBank] |
| Graphic View |
|
| Predicted Position of Insertion | Chr1:28478477 - go to primer design |
| BLAST e Value | 5e-25 |
| Hit Clone Code (BAC ID) | T4O12 |
| Hit Gene Code | At1g75850 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | VPS35 homolog B |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At2g07658
| Sequence (A. th genome BLAST matches underlined) | >33-K015554-022-298-A05-8409 CTGATCCATGTAGAATTTCCCGGACATGAAGCACTTTTGTAGTTCTTCTCTGTTTAAGAC GTGCACTGAGGATAGCGAACGCAGCTCAACAAATGGCTAGGGGATGCTCTATTTCAAGAG CATGGCGCTTAGGAGGGATCCTCACGGACTGAAAAAGATCGTCGTCAGTCTGAAATTGAT CGAGCGCTCTATGCTTGTTCATTACGACCTCAAGGCATCTTTATATCTGAAGCTAGATGG ATCTTGGACTACCTCGGATCATAGATACCTCTATGAACTAGGCGACCCGGACATAGAAGA ATGGGAACGAGAAGGAGTTCTACACCAGCAACTGATATGAGGCGGTTTTATCCTACCACA CTATATGGGCTCCTATGGAGATCCTACATAANNCGAGTNNAAATGTACCATTGGAAGCCT ATGGGATCCTCCTATTGGCGAGATNANGCTGGACCCTGTCTCAGAACACGCCAAGCAACC TATACAGTCTCATATTTGGTACTAACGTTATACTGCTTGTCCCTACCACGAGAGCACCTG AAAGAGACCCACGGCCCAGCAACATACCCGTTTAAGCATAGTCCCTCGTCTAACGTTCCC GCACACGAGGAGAGGAACGCCTTTTGAGATCAGGATGTTCTACCGCTTTTCCTA |
| GenBank Accession | AL946638 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr2:3478692 - go to primer design |
| BLAST e Value | 3e-35 |
| Hit Clone Code (BAC ID) | T5E7 |
| Hit Gene Code | At2g07658 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
