SimpleSearch - Line and FST details


Line specific information

 
Line ID 298B11
Vector Used pAC161
Line Availability available as T3 set from NASC (N428535)
Segregation Analysis 50:42:34
Confirmed for Hit At3g62240
Parent of DUPLO pair 12654
Parent of pair(s) none
Note

Gene hit At5g22940

 
Sequence (A. th genome BLAST matches underlined) 
>82-K015554-022-298-B11-8409
NTTTGATCCATGTAGACTTTCCCTGACATGAANGCCTTTACAATTGAATATATCCTAAGA
ATATTAGCGGACGCTTTTTCTACATTTTTTTCTTGTTGACTTTGACTTTTGTGTTTTTGG
ATTTCTCGTTTAATTTACTAAAATGCCATTTTCTCCCGGCGTGTAGGGGAGTGAGAACGG
CGATTCTAAAGAAATTCGGAGGAAGAAGGCGGTTTTATCTAAACCGGCACCGGTTTGCTG
GATACCGATCAGAAATCGTGAGATCAGTGTTTTGTCTCTGTCCTTTAGGGTGGGCACCAT
GGAGTCCTATGGGATCCT
GenBank Accession AL946667 [GenBank]
Graphic View Graphic view of gene At5g22940
Predicted Position of Insertion Chr5:7678301 - go to primer design
BLAST e Value 5e-93
Hit Clone Code (BAC ID) MRN17
Hit Gene Code At5g22940 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation glucuronoxylan glucuronosyltransferase, putative
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 298C10

Gene hit At3g62240

 
Sequence (A. th genome BLAST matches underlined) 
>82-K015514-022-298-B11-8409
NTTTTGATCCATGTAGTCTTTCCCGGACGTGAAGCACTTTACAGTTGAATATCCAGGCTC
TGCGGATGCGTATAATCCAACCGTTGATACTAATACTGAACCTGGTTTTATTTTAATGTG
ATAAGGCCAAATGTAATGATAAGTTGCTTAAGGATAAAGGCATGAAAGGCCGGTGTTGAT
TCTATGCCGCAGGTGTAAAAAAACGACTTACCTTAATAATTATGATCAAGGAGCCACATG
ACGATGTTTATTTTGTTCGCTAGTGGGATCCTCCCTTAACCGAGAAGTTTCCGATACAGT
CGTGGAAATGATCAAGAGAATCGTCGAGGAAGACCCCGATCATTTCGTCGCGAGCCTGGT
GATGAAAAATATAATCTTGCAGTTCATGCCGCTCTTCGTTTATCTGAGTCTGAGTATTCT
CGGCAAGAGCCTGCTCCTCCACCCTCAAGTGCACCACCCGGATTCTCTGAAAACAACAAC
ATACACGTGGATGATACTGATCCCCTTATTCAGCCAATGGAATCTCTATCAACTACAGAT
ATGGAACCCTCTTCACGGTATCTTCAAGCTGTAGGAAGCTTTGGTGGTGGTGGTTCACGT
CTTGGAGAATCTGCTTTTCCTCCTCTTTCTGGGCAACAGAGTTCTGGACAGAACGTAAAG
AGTTTACCACCTAACACCATGGCTGCTCGTCTAAAACGCCAAACAAATCGAACTTCTACT
GCTTCCGCTATTGCTATGGGATC
GenBank Accession AL946666 [GenBank]
Graphic View Graphic view of gene At3g62240
Predicted Position of Insertion Chr3:23035360 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T17J13
Hit Gene Code At3g62240 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RING/U-box superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37