SimpleSearch - Line and FST details
Line specific information
| Line ID | 298E10 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N428570) |
| Segregation Analysis | 50:45:42 |
| Confirmed for Hit | At2g05710 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 672, 2959 |
Gene hit At5g47780
| Sequence (A. th genome BLAST matches underlined) | >77-K015554-022-298-E10-8409 NTGATCCATGTAGAATTTCCCGGACATGAAGCACTTTACAATTGAATATATCCTGCAAAA TGGAGAAAATACATATCATGTTTTGCTTTGTTTTACGGCCTTTACTGTACACCTCTGACA GAAAAAATGTTCATTTTAAATCCTACAATGATTGGATGATATAACAAATATCACAAATTA TATCGAGACAATTTCTTACATAAAACTATATTTACATGCTGACACAGGATCTCTACGAGG TATTAAACGACTGTACGCACTATGGGATCCATACATTACTGCGATCAGTAGACCTGTGAT CTGGGCCTGACCATTTATTCAGACAATGAACTTCGGGATTACCAAAACCAGCCGATCCAT TGCCGCTTTGGTCCAGAAATGCAAGGTTTAACAGTATCCAGATTCACACCTATGGGATCC TTCGATAGNTGAGATACCGAGACATATACAATTTCATGTACTGATCATCTCGGCAGATTA TAAACGTATAATATTGCCCTCACAACAGACTCTAATTCTACTGATTGATGTTGCATTCTC TGAGATAAACGTGCTCATAGTCTACATGCTATGACCACAAGCCTCTGTATCTTGGAATCC CATNCCCTATGGGATCCTC |
| GenBank Accession | AL946715 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:19350976 - go to primer design |
| BLAST e Value | 2e-73 |
| Hit Clone Code (BAC ID) | MCA23 |
| Hit Gene Code | At5g47780 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | galacturonosyltransferase 4 |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
Gene hit At2g05710
| Sequence (A. th genome BLAST matches underlined) | >77-K015514-022-298-E10-8409 NTGATCCATGTAGAATTTCCCGNGACATGAAGCCTTTACAATTGAATATATCCTGCAATT GAATGTTTAAACATGTTGTTAGCCCGAAGATATGCTTACAATCATAGCCACCTGCCATGA AAGTATTGTATACCACCAGATATCTGAATATATATAGAAGGAAGATTAAAGTCAAACACT CACTGTCTCATCGCTTCTTCCAGTCAATCTTGAGATATTGTGGAGTAACATGATCCACAG GGAAGAAGCCCATGGTTGCACCATACTCGGGAGACATATTGGCAATTGTCAGCCCTGTCA GCTATGGGATCCTCCCATAAGCAGAGAATAAACTTCGCGATTACCAAAACCAACAGAACC CATACCGCTTTGGTCCAGAAATGCAAGGTTCAACATCATCCAGATTCAGTTCTATGGGAT CCTCC |
| GenBank Accession | AL946714 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr2:2143678 - go to primer design |
| BLAST e Value | 2e-104 |
| Hit Clone Code (BAC ID) | T3P4 |
| Hit Gene Code | At2g05710 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | aconitase 3 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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