SimpleSearch - Line and FST details


Line specific information

 
Line ID 299E05
Vector Used pAC161
Line Availability available as T3 set from NASC (N428661)
Segregation Analysis 50:24:18
Confirmed for Hit At3g21620
Parent of DUPLO pair none
Parent of pair(s) 4829, 4850, 4855, 4883, 4885, 7411, 84779
Note

Gene hit At1g19800

 
Sequence (A. th genome BLAST matches underlined) 
>37-K015556-022-299-E05-8409
NTGATCCATGTAGAATTTCCCGGACATGAANGCCTTTACAATTGAGATGGTTGTGGAGGA
GCCAGCGCCCGATAAGACGCCGGATTTAGTGGCGACTAAACGTGGCTCAAGGAGGTTTAA
TAGCGGCTCGGTGAGCCGAGTCCATGATTATGTTAATGCTGATCCCGTAAACTGCATCGG
AGAGCATAGCGCTTGAAGCCATACCAACAGTGAAACACATGAGTGACAGAAACGGTAGAG
CCAAACACGAGGCGATGACTCTTGGAGTGATTAGATAATCAATTGGGTCAGCTCCTAAAA
CACGGAGTGTATCAGTTTGCTCTGAGACTTGCATTGTCCCTATGGGATCCTCCCTTAGNN
GGGAGAGGNANNAAAAANNGNGNNGGNNCAATTTTTTTCCTTTTACAAAACGGATGGGGC
CCTCCCGTTACTGAAACCACCNCAAAAGCCTTAAAACCTTATCAAAAACAATTCATTACT
TTTTTTTCCTGAATCTTTTTACCTTTTTACGTGGCCTTGGACCCTCCAAGGGCTTGATTT
TGATCCAAAAAAAAAAAAAAATCGGAATTTTTTCCCGGGGGTAATTGGCCTTTGGACAAG
GGGATAACGGCGGCGGACGTTGGTTC
GenBank Accession AL946847 [GenBank]
Graphic View Graphic view of gene At1g19800
Predicted Position of Insertion Chr1:6847789 - go to primer design
BLAST e Value 4e-112
Hit Clone Code (BAC ID) F14P1
Hit Gene Code At1g19800 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation trigalactosyldiacylglycerol 1
Insertion Classification CDSi
Confirmation Status failed

Gene hit At3g21620

 
Sequence (A. th genome BLAST matches underlined) 
>37-K015515-022-299-E05-8409
NTGATCCATGGTAGATTTCCCGGACATTGAAGCCTTTACAATTGAGATGGTTGTGGAGGA
GCCTGCGCCCGATAAGACGCCGGATTTAGTGGCGACTAAACGTGGCTCAAGGAGGTTTAA
TAGCGGCTCTGCTGAAACCTTCTCTTAGAATTACTAATTTCTGATTGTATAGGGGAGAAT
CCATCTTAATGGGGGTTATCCCGCGCGGCTTCTTAGGACTATGGGGATGGAATACCTGTT
GGACTGGGACGCCACCCTGTCTTTTGAAATACAAGAAGGGCGTGAACTTTTTGTACGCCG
CATGCCTACTTTTTTTGAAACTTTTCCGGTTGTTTTGGTACACTGAGACGGAATTGTTAA
AGCTGACGTCCCGTTTAGAAGGGCAGAATCAAAATATAGTGTCGAACAAGTAGGTGTAAC
TGTCGAGTTTTATGGCGGTGAACTCAATGGAGTGAGTTATAGTGATCCCGCAACTGTGAA
AAAATATGCTA
GenBank Accession AL946846 [GenBank]
Graphic View Graphic view of gene At3g21620
Predicted Position of Insertion Chr3:7611149 - go to primer design
BLAST e Value 4e-47
Hit Clone Code (BAC ID) MIL23
Hit Gene Code At3g21620 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ERD (early-responsive to dehydration stress) family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37