SimpleSearch - Line and FST details
Line specific information
| Line ID | 302H04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N428984) |
| Segregation Analysis | 50:47:32 |
| Confirmed for Hit | At1g54960 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 2887 |
| Note |
Gene hit At1g54960
| Sequence (A. th genome BLAST matches underlined) | >30-K020163-022-302-H04t-8409 GGGATCCTCCCTTATAGTGAGGAAGTCGCTGCCTATATGATGCGATGAGTAAATAAACAA ATACGCAAGGGGAACGCATGAAGGTTATCGCTGTACTTAACCAAATTTGCCGGGACAGGC AAGACGACCATCGCAACCCACCTATGGGATCCTCCCTATAGTGAGATGATTCATTGTGTT TGTGTTTTCTTTTATACAACTTTTGCATTCTTTGTTTGGCCTTAGAGATATTGGGGTACG GTGAGGGAAGATGAATTTTTGAATATCTTGCTTGAATTTGTTCCTGGCGGATCTATATCA TCACTATGGGATCCTCCCTATAGAGAGACTGTAGAAAAGGCTCCCTTGCACTTTGGCCTA CTGAGACTGTATCTTTGATATCTTTGTAGTACACAGGCGTGTTGTTTTTTTTTATGCCCC CCACCATTATCATCTTGGCGTTGAGTCGTAAGAAAAAATGAGAGAATGTTCTCCCTGTCT TACGGGCAGTTCAGATACGTCCTCAATTTAATCCTTGACTCCATGGAAATGGGGATCCCC TATGATATCATCCTTATACTGAGGGGAATTTGGGGTTCCCAATGTCATCTCCCAAAACAA GGATCCTTAAACTTTCTATTTTGGTGCNTCCAAACGGTAACGGATTTGGTAATCAATTTT TANTCCCAACTTTATTTCNTAAAACCTTTCTGCTCCCATTTCCAAATGAATCCTCCCTA |
| GenBank Accession | BX530862 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:20500471 - go to primer design |
| BLAST e Value | 2e-53 |
| Hit Clone Code (BAC ID) | F14C21 |
| Hit Gene Code | At1g54960 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | NPK1-related protein kinase 2 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX530862 [GenBank] |
Gene hit At1g68550
| Sequence (A. th genome BLAST matches underlined) | >32-K015559-022-302-H04-8409 AATTCTGATCCATGTAGCATTTCCTCGGACATGAAGCCTTTACAATTGAATATATCCTGA TGACGTCTCGACCGTTGCTCCAACTGCTCCAACTCAAATGTTCCTGCTGGTGGAAACAAG GAAACGTTGTTCGATTTCGACTTTACTAATCTACAGATCCCTGATTTTGGTTTCTTGGCA GAGGAGCAACAAGACCTATGGGATCCTCCCTATAGTGAGTAAGTGGAGATCTCACATGTA TCCGCTTGCTTTGAAGGCTGGGGGGGAACGTGTGCTTTTTCCACGATGCTCCTCACGGGT GGGGGTCCATCTTGGGGACCACTGTCGGCGGAGGCAGCTTGAGCGAAGGACTTTTCTTTA TTGCAGTGATGGCATTGTGCATGAGCGCACCTTCCTTTTCCACTATCGTAGCAATAAGGA GACAGACATGTGGGCAATAGGAATCCGAGGAGGTTAACGGATGTGACCCTTGGATGAAAA GTGTCAGTAGCCCTATGGAATTGTGAGAATAAAGATGTTCGAACATACGCGAACCAACTG CGTTTGGGGATCGGAGCACCTGAATAATCATGCCATCATGCCCTGCGACGTTAAAGAGCC TATTGTGGAATGTTAGCCTAGTAAATACTGCGAATTGGGGACCTGCTAATATGAGGATCT TTATTGCGCACTAATTGAGGGAGCTCATATGCTTGCGGATAATCAAGGATGGCTTACCTC GCTGGATTTGCGGCGCCCAAACAGGAGCGGAGCGGCAAATCAAATTTTAAGTCTCAACTT CTACTAAAGTAAAACA |
| GenBank Accession | CT026245 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:25726166 - go to primer design |
| BLAST e Value | 5e-71 |
| Hit Clone Code (BAC ID) | T26J14 |
| Hit Gene Code | At1g68550 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Integrase-type DNA-binding superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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