SimpleSearch - Line and FST details


Line specific information

 
Line ID 304F02
Vector Used pAC161
Line Availability available as T3 set from NASC (N429150)
Segregation Analysis 50:39:34
Confirmed for Hit At3g50140 At3g50140
Parent of DUPLO pair none
Parent of pair(s) 10195, 10229, 85160, 85164, 85168, 85171, 85172

Gene hit At3g50140

 
Sequence (A. th genome BLAST matches underlined) 
>14-K015570-022-304-F02-8409
TTTTGATCCATGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGATAA
GAAGTATTTTCGAGGTCGAAAGCCACTTCTTGACATAGCCGGTTGAAGACATCAACAACT
TCTGAATCATTTCCTAACCAGAGCTCGATGATATCATAATAATGCAAATACCTAATATCT
TCAGCAGAATCTATTAGATTGTCCATGAAGATAATGTAGGATGTTATGTCGTTCGTTGAA
TCGATATGGCACTGCTCGTAAGCTATAAGATTTGAGAAAAGAGACTTGGTACCTACAAAA
AACACGAAGAGAGACCATATAGTGTTTTTGTGAGTTTAAGGAATTATGAGGGTTCTCTAT
GGGATCCTC
GenBank Accession AL947470 [GenBank]
Graphic View Graphic view of gene At3g50140
Predicted Position of Insertion Chr3:18592663 - go to primer design
BLAST e Value 2e-160
Hit Clone Code (BAC ID) F3A4
Hit Gene Code At3g50140 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation transmembrane protein, putative (DUF247)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At3g50140

 
Sequence (A. th genome BLAST matches underlined) 
>14-K015592-022-304-F02-8409
CTGATCCATTGTAGATTTCCCGGACATTGAAGCCTTTACAATTGAATGTATATAGTAAAA
AGTCTTTCTATTAAAAGTATTGGAAGACATGTCCATATAACATTGCTCGCCAAGCACTTA
TATATCCATTACGTTTAAAGATCGTTAAAACATTTTAATGTTAATGTATGATTAGATGTC
AATCACTGGTTGTTGTCATTACAGATCAAATAATATTGCGACCAATGACAGCTTTAGTTC
AGTTGTTACATATTTGCTTTTAGACTTTTTCTATGTCACTCTCAATCTCCTAAAAACCTT
CAACAAACAAAAATGGCAACTCCTATGGGATCCTCCTTAAGNTGAGANGGNNCCCTATGG
GATCCTCCCTATAGTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNN
GenBank Accession AL947471 [GenBank]
Graphic View Graphic view of gene At3g50140
Predicted Position of Insertion Chr3:18594818 - go to primer design
BLAST e Value 3e-103
Hit Clone Code (BAC ID) F3A4
Hit Gene Code At3g50140 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation transmembrane protein, putative (DUF247)
Insertion Classification Promoter
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37