SimpleSearch - Line and FST details


Line specific information

 
Line ID 306A08
Vector Used pAC161
Line Availability available as T3 set from NASC (N429288)
Segregation Analysis 50:49:42
Confirmed for Hit At1g13890
Parent of DUPLO pair none
Parent of pair(s) 2184, 8173

Gene hit At1g13890

 
Sequence (A. th genome BLAST matches underlined) 
>57-K015575-022-306-A08-8409
TGATCCATGTAGATTTCCCGGACTGAAGCACTTACAATTGAATATACACCACAAGAACCA
AACCTCAACTTTCTGCAACGCATTTGTTGGTTGATCTAATGCTGGTTGACTGCTCGATCG
TCCTTTTGCACCCAAACCAAGTTTCTCCCGCTCTTCCTTGTGATTCTCGCTCTTCTTCGA
CGGTTTATCTAAAATTTCGATAACTATATTAAACATGACCACCATACACATGATCAAGAG
TCCTAACAACGTGAATACAATAAGGATTGAGATTATATGAGTTATTAACGGGCTATGGGA
TCCTCC
GenBank Accession AL947643 [GenBank]
Graphic View Graphic view of gene At1g13890
Predicted Position of Insertion Chr1:4752485 - go to primer design
BLAST e Value 3e-131
Hit Clone Code (BAC ID) F16A14
Hit Gene Code At1g13890 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation soluble N-ethylmaleimide-sensitive factor adaptor protein 30
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit F2I11

 
Sequence (A. th genome BLAST matches underlined) 
>57-K015598-022-306-A08-8409
AAATTTGATCCATGTAGCTTTCTCTCGGACATGAAGCCTTTACAAGTATTCGAGTATTTA
ATTTAGTCAAAAAACAACCAACACCCGAAAACTAACGAATGGACCGATTAATTTGCCAGA
TGTTCTTGTGGTATTGTAGAGTTAACCTGCCAAACAATACTAATCATGTCATGTTCACGC
CTATGGGATCCTCCCAATAGTGAGATCGATAACTATATTATACATGACCACCATACACAT
GATCAAGAGTCCTAACAACGTGAATACAATAAGGATTGAGATTATATGAGTTATTAACGG
ACTATGGGATCCTCCCTATAGTGAG
GenBank Accession AL947644 [GenBank]
Graphic View Graphic view of sequence AL947644 of line 306A08
Predicted Position of Insertion Chr5:3578917 - go to primer design
BLAST e Value 8e-61
Hit Clone Code (BAC ID) F2I11
Insertion Classification Genome Hit
Confirmation Status unknown


Last Updated on 10.06.2021 13:37