SimpleSearch - Line and FST details


Line specific information

 
Line ID 308B09
Vector Used pAC161
Line Availability available as T3 set from NASC (N429493)
Segregation Analysis 50:49:35
Confirmed for Hit At5g45530
Parent of DUPLO pair none
Parent of pair(s) 9611, 9693, 95204

Gene hit At5g44875

 
Sequence (A. th genome BLAST matches underlined) 
>66-K015815-022-308-B09-8409
GATCATGTAGATTTCCCGGACATGAAGCCATTTACTATTGACGCTTAACTAAATATTCTC
TAAGTTATGTATAGGGATGAACAAGGGATTTTAACTTCCCGCTTAGTTAAATTGTATCTT
ATCGATTGTTCTCTGCTATTATATATATAGCTAAATATAAAAGTGTATTTTCCGCGACAG
GTAACGGTAAGTGAGCTATCCTCTTGTACTATCAATGTGGATATTTGTCCTATGGGATCC
TCNCTATAGTGAGATCATCGCCTTGACAGGCACGATTACTAGATAAGGGAGGAAGGCGCA
AGTGTCTACCACGTGAAGCTTATGGAACGCACATGCTCCTGTAGAGCATTTGATTTGCTT
CACTTGCCTTGCCCCCACGCAATAGCGGCTGCAGTGGCTGAAGGCGTTCCAATACAAGGA
CTGATGGCGCCGGAATATTCTGTTGAAAGCTGGAGAATGTCTTACCTATGGGATCCT
GenBank Accession AL947893 [GenBank]
Graphic View Graphic view of gene At5g44875
Predicted Position of Insertion Chr5:18124081 - go to primer design
BLAST e Value 9e-113
Hit Clone Code (BAC ID) K21C13
Hit Gene Code At5g44875 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation  
Insertion Classification TS2TE
Confirmation Status unknown

Gene hit At5g45530

 
Sequence (A. th genome BLAST matches underlined) 
>66-K015783-022-308-B09-8409
TATCATGANATTTCCNGGACATGAAGCCATTTACATTTGAGTAGAAAATCAATATCCAAA
ATAATCAAAATATATTTTACCGTTTTATTAATTAGAAAAAATTTAAATAGCCTCATTATG
AAGGTTTTCTCATAACATTTTTATGTCAGTTTTCAGGTGTTTATGCGGCGGTGCAATCGC
TATGGGATCTCCCCTATAGTGAGATCAATGTGGATATTTGTTCTATGGGATCCTCCCCTA
TAGTGAG
GenBank Accession AL947892 [GenBank]
Graphic View Graphic view of gene At5g45530
Predicted Position of Insertion Chr5:18456421 - go to primer design
BLAST e Value 3e-26
Hit Clone Code (BAC ID) MFC19
Hit Gene Code At5g45530 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation transmembrane protein, putative (DUF594)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37