SimpleSearch - Line and FST details


Line specific information

 
Line ID 308C04
Vector Used pAC161
Line Availability available as T3 set from NASC (N429500)
Segregation Analysis 50:34:26
Confirmed for Hit At2g40400
Parent of DUPLO pair 2382
Parent of pair(s) none

Gene hit At2g40400

 
Sequence (A. th genome BLAST matches underlined) 
>27-K015783-022-308-C04-8409
TATAGCGAGGAATATTTCCCGGAAACAACTCCAACACCTGCAAGCTTCAAGCCACCGATA
ATAACTGAAGCAATCCTAAGACTCAGAGTCCACTCTTGTCCACCTAGGTTATGTCACTGG
TAACGCCCTTATCTTAGAGGGCAGAATAAGGGTTGTACAAGGATGGAGAATGAGAAGTGA
TCAGCCAGCCTACAGACTTGAGATGAGGAATTGTCGCAAGATTTATATAAGGTGTGGGAT
GCTCTCTCTAGGGAGCTCTGATGCATATCCTCCACATGATGAGAGTGAGGAGTCCAGCTA
TGGGATCCTCCCTATAGGGAGATAATTGCTGGGATAATAGAGCATCGCATTTCTGACGAG
CTTTCTTCTCAACCTCTACTTGTAAACATGATTTCATTTGAGGTTCGAGTAGCTAACTCC
TACTTTGGAACTCAGGTCAGAATTAGGCCTGTACTATGATCTCTTCTTGAATTCTTTGTC
TCCTTTTTCCTTATTATTATTTTTGGTTAATTCTTGATATACCGTTTAACTTCATTCCAA
CTTTTTTCATAAAAACGCAGCAATGGATTGATCTTGCGCGCTCTACGGGTCTGCAAACTC
AGAAAAGTGTCACAACTTTCCACCAAATCCCCGAGGTTGGCGAGCCAATCCACAGTGGAA
TACAGTACAACTGAAGAGGGCAGTATGGATGATCTTAAGATTCAATGAGATTTATGCGGC
TATGTG
GenBank Accession AL947900 [GenBank]
Graphic View Graphic view of gene At2g40400
Predicted Position of Insertion Chr2:16871893 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T3G21
Hit Gene Code At2g40400 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation DUF399 family protein, putative (DUF399 and DUF3411)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL947901 [GenBank]


Last Updated on 10.06.2021 13:37