SimpleSearch - Line and FST details


Line specific information

 
Line ID 310B09
Vector Used pAC161
Line Availability available as T3 set from NASC (N429685)
Segregation Analysis 50:50:41
Confirmed for Hit At3g17800
Parent of DUPLO pair none
Parent of pair(s) 2447, 65482

Gene hit At3g17800

 
Sequence (A. th genome BLAST matches underlined) 
>22-K119267-0022-310-B09C-8409
CATTTACAATCTCAGGCTTACCAAACAATGCCTCTGTGTGCTTCTCGATGATTCCAACTG
CTTCTCTTGATCTTATAGTGGCGTATCTCTGCAGCGTCTCCGCATCAAATGACATCACAT
ATGACCTTAATCGGGATGGTTTAATCTCGCTGCCGAAGCCCTTAGCACTAACTCCGCCCG
CAAATGCACCAACCTCTGGGTGAGACGATACAGCCGCCTGATATGTTGCCGTCCCCTCGG
CTTGCTCAACGCTTGTTTTACTTTCATCCGACCCACCCGGAAGAATCTTCATCGTCTTCT
CAAGCTGAAACCTTTGGTCCACCCTCTTCAAGAAATATCCATACATCACAGAAGCAGCGT
AAACTTGGCCAACTCTGAGCTTGCTTATCTGTGCAACAGAGTTCAGA
GenBank Accession LN713416 [GenBank]
Graphic View Graphic view of gene At3g17800
Predicted Position of Insertion Chr3:6091406 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MEB5
Hit Gene Code At3g17800 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation alanine-tRNA ligase, putative (DUF760)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL948148 [GenBank]

Gene hit At5g43105

 
Sequence (A. th genome BLAST matches underlined) 
>66-K015791-022-310-B09-8409
TGTCCTGTAGATTTCCCGGACATGAAGCCTTTACAATTGAATATGAAGCCTCAAATCCAT
GACTGGATTCCCAGTTAAGAAGGCAACACTGACATTACTTCCATTACAAGCAATGGTGGA
AGAGTAAAGTGCATGGTGACGGTGTTCGGCATTCTGAATCTCACCGAGGACTCCTTCTTC
GATGAGAGCCGGCGGCTATGGGATCCTCNCCTATAGTGAGAGAAGTTATGCCCGGGTTCC
CCCGTTATGCATCGCCCGTATTGAGTTTGTGCCATCCTACAGTTGGAGCCGTCCATTGTA
TTAACCTGCCCACTCGATCCACCACCGGTCTAAGTTACCTTTTTTTTGAATTCGCTAAAG
AAACTTCGGCAGCTACATCCTTGAAGAAACGCACTCTATCTCGACATCTCCTGTTATCAC
CAAAAACGTTCTCACATCTCCAGTTTCCATCCCCACCAACAGGCCAGGGCGAACAAAGTC
GACCAATCACTACCTTCTTTATTACCACTCTGTCGCAGATTCGTGTGAATCCACTCAAGG
AAAGACATAGTGAAGAACCCCGGGTGCATGCGCCTA
GenBank Accession AL948149 [GenBank]
Graphic View Graphic view of gene At5g43105
Predicted Position of Insertion Chr5:17308551 - go to primer design
BLAST e Value 6e-154
Hit Clone Code (BAC ID) MMG4
Hit Gene Code At5g43105 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation  
Insertion Classification TS2TE
Confirmation Status unknown


Last Updated on 10.06.2021 13:37