SimpleSearch - Line and FST details
Line specific information
| Line ID | 310E01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N429713) |
| Segregation Analysis | 50:14:10 |
| Confirmed for Hit | At4g33410 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 7912 |
Gene hit At4g33410
| Sequence (A. th genome BLAST matches underlined) | >05-K015791-022-310-E01-8409 GATATGTAGATTCCCGGACATGAAGCATTTACAATTGAATATGACATACCAAATGTATTT GTGTCCCTTGGAAGATTTTAGATCAAAAATATTCACCACATCTCTATGGGATCCTCCCTA TAGTGAGACCTCTGTGCCTTGATCTTCCAAGATCCGATCTCTCTCACTCGCTGAGAAATT ATGGGGATCCGATCCCCATTTTTTTTTGATTTTCGATTATCAAAGACCTATGGGATCCTC CTCTATAGGGAG |
| GenBank Accession | AL948184 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:16082693 - go to primer design |
| BLAST e Value | 8e-27 |
| Hit Clone Code (BAC ID) | F17M5 |
| Hit Gene Code | At4g33410 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | SIGNAL PEPTIDE PEPTIDASE-LIKE 1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g44570
| Sequence (A. th genome BLAST matches underlined) | >05-K015787-022-310-E01-8409 TGATCTGTNATTTCCCGGACTGAAGCCATTTACATTGAATATATCCTGCCACATGTTTTT GTGTTTCGTTGGAAAATGTTAGATCTAAACTTTTGCAGCGCACATTGCTATGGGCATACT CGCTAGAACGAGAGCCCGGACGGTCAGACTCATAGTACCACATGTTACATGTAGTATATA AATAGGTCTTATAATGTAGTTTTGAGAAAGTGGAAAACCTATGGGATCCTCCCTATATTG AGAAACAAAACGCCTGACCTACCGAACTTGAACAATATGGAGACCCTGCAAATAAGAGAA CAATTGTCAAGTTAAAGATCTTAACCTATGGGATCCTCCCTATAGTGAGACGCACCTTAA CCCCCCCCTTTTTATTAATACCCACCTAACTATATACCACCTCCCTCCCCCCAATTTTAC TCTCACGCACCTATTTCAACATCACACATCGCCCCACCCCACTACAATATACATCCCTCC CTAGTCCCCGATATCGCCTCCCACCCTCCTTCCCTCCCCTTTCTCGTCCCCCCCCAATTT TCCTCGCACCTTACTTTCCTTGACCCAGCTTTGCCCCGTACCCAATTTTCGTCCCCCCTT ACCCCCTCGCTCCCCTAGTATTTTCCCCCCTCCCCCGCCCTATACCCCCCGTGCCCATCC CCCCTCACCTCCTTATACCCTGTGGTATCGCTTCCCACCCCCTCCCCACCGCCCCTTCTT ACCTCCTGTGTAACCCCCGTGCTTACATTTTCCACCATATAAATCCCCTTACCCACTCAG TCGGCGTCGGTTTTTCCCACTTATCACTCGTTTTTCCCCCTCTACCACCCATATCCATAT ATATA |
| GenBank Accession | AL948183 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:17964271 - go to primer design |
| BLAST e Value | 4e-35 |
| Hit Clone Code (BAC ID) | K15C23 |
| Hit Gene Code | At5g44570 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | transmembrane protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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