SimpleSearch - Line and FST details
Line specific information
| Line ID | 311A11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N429771) |
| Segregation Analysis | 100:92:72 |
| Confirmed for Hit | At1g12120 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note |
Gene hit At1g71680
| Sequence (A. th genome BLAST matches underlined) | >81-K015792-022-311-A11-8409 TGTCATGTAGATTTCCCGGACATGAGCATTTACAATTGTAGGTATTCTTCACAACACGCA TAACCCATCCAATGCCCTCCTCACACCATAGCTGCCCTATGCTATACTCCCTATATCGAG ATGGCAAATGGTACAGTTGCACGAAGCCGTTCCAGGGAAACGGATGGACCGTTACCCCGA GCTATGGGATCCTCNCTATAGCGAGACTAAGAGCTCCGCCCTAGTCGCCAGATATCATCG CTCTCTCTCTCGCGACGACAGATTCAGAATGTGTCATCACTATAGGAGCCTCGCGGTAGC GATACAAGAGCCTATGGGATCCTCGCCTATATGCAGATGAACAATTGCCCTTTGGGTACA GACGGTGTGTGCACCTCTCTTCTTGAGATATGTATCTTTTCTTTCTACAGGCCACGCTAC CCAGGTGGGCTCGGAAATCTAACCAAAGGAATGTTTTCAGGCTGCCAATATATCGCAAAG CTGGTGACTTCCCTTAATTCCCGGCTTAGCATTTCTCAAATTGGTTAGTCCTCTAAAGGG GTCCTTTTAATTAAAAGGCCCAGCCCAACCTTGGTTTTTATGTCCGCAAGGAAAAAGACG CTTTTGACTTCCTCCACCTAGCAAACCACCGGTTGAAATACAGGACCTTTGGAAACGCGT CCAAATATTTAGCCCCCACAAGGGAAAAGTATGTGGCCGACTGGTTATTTTTTGCGGGAA ACCCTCTTTAAGAAAAACCTTGGCGACCTGCCCACATTTTAAAGGGCTTTTTTATAGGCC CAAAGCCTAAGAAATTTTTGGGTTTGGGAATTTTAC |
| GenBank Accession | AL948264 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:26945158 - go to primer design |
| BLAST e Value | 1e-25 |
| Hit Clone Code (BAC ID) | F26A9 |
| Hit Gene Code | At1g71680 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Transmembrane amino acid transporter family protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 380B01 |
Gene hit At1g12120
| Sequence (A. th genome BLAST matches underlined) | >81-K015788-022-311-A11-8409 GAAGCCTTTACATTGTATAGATATCTTTCGAGAGACATAAGCTATCCCATACCTCCTCTA GTCTTGCTCAATACGGGATCCTTGCGATAGTGAGGTATCCAGATTATGGTAATCATTCTC CCAGTTAGAACCCTGGTGTTGCTCTTGATCCGCTCAGAGACCCATGTCGCCTTCTGTCCT ATCTGAGACTCGCGAGAGTCTGCTCTCTCTTCTCTCTCTATATCGCTCCTCATGATCCGA TTTTTTATGTAATTTCTCAAACAATTTGTGTGAGAATTACAGATACGCGGTATTTGTGTG TATATTGATAGAGACCATCGCCATTGGAATCTGACCATGGATCTCGCACCTTCTTGACAT ATCCTTCATTTCTTTCTCCGGATCTCGACTCCCAGATCTGGTCGGCAACCTCACCATTGG AGAGCTTCGAGCTTCCTTTGTCTCGCTCTCAGGTGAGTTCCTCAAGTCACAGTATAGTAT TTATAGATTGGGATTCTTTCCATAGGGATTCTCACGGAAAGGGCGAAGTAGTACTATGTT TTATGTTCGTCATGAAGTTGATGCTTTTACTTTTCCTCTTATAGTTCCTTCTGTTGAATT CAGGATTTAGGGATATGTTTATATATCTATCATCCAAATGTGAATATATGTGCGATTGGT TCTTTTTATGGAATCCATCTCCGAATATTTTTACCTATTTGCATGCTTTTAGAGTTTTAT TTATAAGCAGAAGCCTGAAGATTTTTGTGTTTTGGATATT |
| GenBank Accession | AL948263 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:4117712 - go to primer design |
| BLAST e Value | 2e-153 |
| Hit Clone Code (BAC ID) | T28K15 |
| Hit Gene Code | At1g12120 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein (DUF863) |
| Insertion Classification | Promoter |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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