SimpleSearch - Line and FST details
Line specific information
| Line ID | 312C03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N429883) |
| Segregation Analysis | 100:94:93 |
| Confirmed for Hit | At3g46010 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 5868, 5870, 5993, 8757, 8788, 10449, 10470, 85502, 85503, 85504, 85505 |
Gene hit At3g46010
| Sequence (A. th genome BLAST matches underlined) | >19-K015817-022-312-C03-8409 CTCCCTAACCACTGTTTCTCTTTTTAATTTCAATTTATATATGAATTACCATAACATTTG GCTGTTGGATCCATTACCCTTGATGAGAGATTCATCAGTTTCATGTAATTGATAATCACT CTATGGGATCCTCCCTATAGTGAGACNAANNNANCNTANATTTTCTTACAATCGTGACAA GAGATATCTAGTGCTCTTATCTCAATTGTCGCTCACAAAGTACAGAAGTTCCGATAATAT CTCAACAATGGTATCCTCCCTATCGATGAGAAGCACTCTCTAAAGAGTAATCTACATTAC TCCTAAAAGATTAACGTATTTTGTGAGACAACCTCTGTCCATTGATGCCGATGATGGTAT GGTCTGATCGAAAACATATCGACTACAAAAGGTGACACTTCTATCACATACTCAAAATAG TGAGAAAAGAATAATTACTGAAATGAGAGA |
| GenBank Accession | AL948408 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:16910472 - go to primer design |
| BLAST e Value | 2e-21 |
| Hit Clone Code (BAC ID) | F16L2 |
| Hit Gene Code | At3g46010 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | actin depolymerizing factor 1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit F4I1
| Sequence (A. th genome BLAST matches underlined) | >19-K015821-022-312-C03-8409 TATCATGAGATTTCCNGGACATGNAGCCATTTACAATTGATATATCCCAGTGATGATTAA ACCAACATCAATTGATGATTATATCCAGTTCGATACTCAGATATAACGTCTATTTGCCAA CATCACAATTTTAACCACTGTTTCTCTTTTTTATTTCCATTTAGAGAGGGACAACCATCC CCTTCCCCCGAAGGGAAACCTTCACCCATGAGGAAAGATTCATCAGTTTCATGTAATTGA TAATCACCCTATGGGATCCTCCCTATAGTGAGANNGNNNNCCNNTGNNNNATGGNNTNGA AAGTAAGNGACATAATAGCGGAAAGATAGATGGAGGACCAACTTCATTGAGCAAAACCCT TCTATAGCATGCCTCCTATAACCGAAGCCAATATGCCCTATGCGATCCTCCTTACAAAAA CGCTAACTATAGAAATCTCCCGACACAGAGCAAAACTTCTAGATACAAATTAACCTGCCG AAAAGGCACACTCTGCTCCGAAGACGTATAGAAAAGAGAGAGACCAGCAACAAATATAAA CCGAGAAAAAAAACCCCCAAAAGAACAAGCCACAATCCAACTGAAGTCACGCGAACGCGC GCAATTACCCTGACAATAACCAACATAAAAGGAAATAAACAAAATGAAAGAGAACCAAA |
| GenBank Accession | AL948409 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:18352726 - go to primer design |
| BLAST e Value | 7e-18 |
| Hit Clone Code (BAC ID) | F4I1 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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