SimpleSearch - Line and FST details


Line specific information

 
Line ID 312E06
Vector Used pAC161
Line Availability available as T3 set from NASC (N429910)
Segregation Analysis 100:99:66
Confirmed for Hit At5g66700
Parent of DUPLO pair none
Parent of pair(s) none
Note

Gene hit At5g66700

 
Sequence (A. th genome BLAST matches underlined) 
>45-K015817-022-312-E06-8409
TGTCCTGANATTTCTCGGAATGAAGCCATTTACATTGAATATGTAGAGAGGATGACCAAC
TATACGCTATGGGATCCTCCCTATAGTGAGAAAATTCGAAAACTGTCGGAACGACTTGAA
GAAATGCCAACCAACAGTTCAAGTTCATCGCTTTCTGTTGAAGCCAACAATGCACCAACT
GATTTCGAGCTTGCCCCGGAAACTAATTATAACATCCCGTTTTATATGTTAGATAATAAT
TATTTACAAAGCATGGAGTATTGGGATGGTTTGTATGTATAATCAGTTTATCAACTAAAT
ATCTCGTGCTTTATTGATGCAACTCATGTTATTATAAGTAATGTAGAAATAGGTGTTGGT
GAAACGGTTGTAATTATGTGTTGTTTTCAGTATTTATTTTAATATATTACTTTGTTTATT
ATCACTTTGCTTCTTCTATGGGATCCTCCCCTAATAGTGAGGAGNNNNCGGATATTANNN
CTTCGCTGTTTTGTCTCCCTCCGCCCCTTGGAATATCCAGACTGTATCTTATGATATGAA
TCGGAGTAAACAAGCGTGTCCGTGCTCCACCCTGTTGACGAAGATTTTCTTCTTGTCCTT
GAGTCGTAAGAAACTCTGTATGAACTGGTCGCCAGTCTTTACGGGGAAGTCCTGTTAGGG
CCTCTATTTGAATCTTTGAATCCATGGGGAATGGGGGATCCTC
GenBank Accession AL948448 [GenBank]
Graphic View Graphic view of gene At5g66700
Predicted Position of Insertion Chr5:26635539 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MSN2
Hit Gene Code At5g66700 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation homeobox 53
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g66770

 
Sequence (A. th genome BLAST matches underlined) 
>46-K020162-022-312-E06t-8409
GAAATTCAAAAACTGTTCCGAACGACTTGAAGAAATGCCAACCAACAGCTTCAAGTTCAT
CGCTTCTCTATGGGATCCTCCCTATACCGAGAAATAACCAAAGCCTTTTCACACGATAAA
TTATTACTTCTACCTGGATCCACCTCGCTTCAAAATTATATACCACCGCTCACGGAGATC
ACACTCTGACCCAAACTAACCTTCCAACACTCTTCTTCAGATCCGAGAATCTGTATCGGA
GCTATGGGATCCTCCCTATAGTGAGANNCNNGGNCTTTCCTTTATCCCTATGATGGNATT
TGTACGAACCACCTTCCTTTTCCACTATCTTCACAATAAAGTGACAGATAGCTGGGCTAT
GGGATCCTCCCAATA
GenBank Accession CT026247 [GenBank]
Graphic View Graphic view of gene At5g66770
Predicted Position of Insertion Chr5:26661185 - go to primer design
BLAST e Value 2e-15
Hit Clone Code (BAC ID) MSN2
Hit Gene Code At5g66770 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation GRAS family transcription factor
Insertion Classification CDSi
Confirmation Status failed
Other FSTs Supporting this Hit CT026246 [GenBank] CT026247 [GenBank]


Last Updated on 10.06.2021 13:37