SimpleSearch - Line and FST details


Line specific information

 
Line ID 313A06
Vector Used pAC161
Line Availability available as T3 set from NASC (N429958)
Segregation Analysis 50:44:43
Confirmed for Hit At2g23950
Parent of DUPLO pair none
Parent of pair(s) 6099, 6114, 6143, 6169, 6182, 9087, 9119, 10857, 86065, 86080, 86106, 86112, 86116

Gene hit At4g15550

 
Sequence (A. th genome BLAST matches underlined) 
>41-K015822-022-313-A06-8409
TATCATGAAATTTCCCGGACATGAAGCCTTTACTTAGAGATTGTGAGCCTTGAGCTATAT
ACCGAAAATGTCCCAAATAAATTTTATCAAAATGTGAGAGGATGCAACGTGACATGCATG
TGGTCATGTGGATCATAGATTCGTAGTGAGAGCGTGTAACACTCAGAGACTCTTAAATAA
GATTGTTTTCTCAATTTTAAACCGCCACAAAACCAAATGGTCGAATTATTATTTTTTTTT
GCTAAGAACTGGTCCAATGTATTACATAGGACCTAAAACAGAATGAACAAATCTTTGGTT
CGTATTGATAGCCCACACCCTATGGGATCCTCCCTTATTAGAGAGAGATAGATAGATACA
CGAGAGAGCACAAATGATACAATCAAATTGTCAGTTTTACTTGGTCTTACTTGACAGCCA
AGGAAACAAAAGAAATTGAATGTTGCAGACTGATGAATCCTGAGTTTCCGAGTATATAAG
TTCTTTGTGTAACTGAAGAAGCCAAACTCTTAGTGAGCGTTGCGTGTGATCAAGCCCTCG
AATATGACGTAGAGATCTCTGTTATCGCCTCCAAATATCTCTTCAGCTTTCCTAAGTGTT
TCCTATGGGATCCCCCCNATAAAGGGAGAAGNNNNNNNNNNNNNGGNNNNNNNNNNNNNG
NTNNNNGGGGAAGGGGGGAGAAAAAAGGGGAGAAAGGTTAAAAGGGGGGGGGGAAAAGTT
GGGGGGNGNNGNAATGGGNNGGNAAGAANGGGGGGGAAAGAGAAGANGGGGNGAAAGGAT
TAAATGGGTTTTTAAAAGGGGTATTTGNNTTTCGATGGAAAAAGAAAAGTGGTTTTTTTT
GGGAAATTTNAGTGGGAAAACGAAATTTGGGTTTTGGGTTA
GenBank Accession AL948517 [GenBank]
Graphic View Graphic view of gene At4g15550
Predicted Position of Insertion Chr4:8878018 - go to primer design
BLAST e Value 1e-148
Hit Clone Code (BAC ID) FCAALL
Hit Gene Code At4g15550 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation indole-3-acetate beta-D-glucosyltransferase
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At2g23950

 
Sequence (A. th genome BLAST matches underlined) 
>41-K015818-022-313-A06-8409
AATTATTAATAGGAACTAAAACAGAATGAACAAAACTTTGGTTCGTATTGAGAGCCCACA
CCCTAGCTATGGGATCCTCCCCNAATAGTGAGACAANGANCAACNNANNNCTCCTCCCTT
TTTTTGAAAACACCATGTGGATCATCCAACTCGTTCTTTATGCTTATCAACGCCTCCACT
GNAACAAAGAATCACTCTAAATCAATTATTGGGTACATAAAGTTTGAAACTTTCGAATAC
CCATAAGAAAAAAAAGAGGCTTTTCTCGTTTTTTGTTGCTTTGCTTACTTCCGGGTTTCT
GGGTTCAGAAGAGAGAGAACCAGTAACGAAGAACCTAGTTAGTAACGGAAACGAGAATAT
CTTCTTTGTTATTACCTTCATC
GenBank Accession AL948516 [GenBank]
Graphic View Graphic view of gene At2g23950
Predicted Position of Insertion Chr2:10189382 - go to primer design
BLAST e Value 2e-85
Hit Clone Code (BAC ID) T29E15
Hit Gene Code At2g23950 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Leucine-rich repeat protein kinase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL948516 [GenBank]


Last Updated on 10.06.2021 13:37