SimpleSearch - Line and FST details


Line specific information

 
Line ID 313F11
Vector Used pAC161
Line Availability available as T3 set from NASC (N430023)
Segregation Analysis 50:49:40
Confirmed for Hit At5g37080
Parent of DUPLO pair none
Parent of pair(s) 3566, 3611, 3663

Gene hit At1g49390

 
Sequence (A. th genome BLAST matches underlined) 
>86-K015818-022-313-F11-8409
CTCCATGAATTTGAGAAAGATCCCATCTCTCTTCTCTGTTATGATCTTTAGCCAAAACTT
CCTCTCCCCAGTCTTACGCTATTGCACATTCTCGTGTCCCCAAAATAAAAAAGTCTCAAG
AAAGATATTGAGGGTGAATCAAAAATCGATTAGAGAAATTTTAAAAACCGCGATTCCGAG
TGTCTGCATCTCTTCGTTCAGATCACTACAGAGACAGGTGGTATCCAAGGATGTGGTAAC
GATATGATTCTGCCTGATAAGCAAGGTCTTGATCGGATCGACCGTTTGTTTCTCGCTACT
TACCCTGAACATAAGCGTCAACTTAATTTCTGGCCTCGAGTACCTGTCGGATTGCCGTAA
CACAAGTGACACCACATTGGTTCATTATTGACTGTGGGGGTGATTTTGACTATAGATTTT
TTATTCAGCGAGACGTTATATGAATACACACTGAAGCATCGGGCATTGATGGAGAAATTC
TTTAAGGCGATGGATATGGG
GenBank Accession CT026250 [GenBank]
Graphic View Graphic view of gene At1g49390
Predicted Position of Insertion Chr1:18279822 - go to primer design
BLAST e Value 3e-97
Hit Clone Code (BAC ID) F13F21
Hit Gene Code At1g49390 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At5g37080

 
Sequence (A. th genome BLAST matches underlined) 
>86-K015822-022-313-F11-8409
TAACTCTTCTGAGATTTCCCATAAGCTTGGTTGCTTATTTTCAACACCATGAGTTTAATT
TCAGCTGTCTGGTCCATTACACGAACATGAAGCTTGTACCTGGAGTAAAATGTATTGTAC
ATATATAATTAATATACACTTATAAACCTTTATATTTTCTGTATACCAATAGAAACAATT
TTGTTATATTGTACAAGATAAAAGAGTAATAGAAAACATTATTACCTTGCCTCCACATTA
GTGATGCTCTCTTGACATTTGTCACACCAGAACTTAGGTTTCATAGGTGTCTTGACCATC
TTACCAGTGCTGGTTGATTCTTTAACCAGCTCAGTTTTTCTGTTACATTTAGGACATCCA
AAATAGAACCATCCCCAATCGGTATCAATGGCAAAAATGGAACCAAGTATTCTCCATTGC
CCAACCTGATTTACAATACAATCACAATTATAGGTACTTAAACTAAACACAGTAATTTAG
GAATTAGTGGAAATATACTTACGTCTCTCCCATGAAGTAAATCAACAATCGTTTTGGCAG
GATAATCAAAAAAATTATCTTATTTCACCTTNAATTAAGTCACGATTCACATAATTATCT
TGAATAGTGAGAGCAAGACCATCACTTGGGAGTCTGCAAATAAGCATTTGTCTGGTTAAC
ATGTTTGGTGATTTAAACAAAACAAAGAAGGTCAAAATATATTTTGCACTTACGATTTCA
CGAACAGTTTCACCTCCGGAACATGAACTGGATTGATTATGACTTCCGAAACATCAAAGC
ACTTGTAATACTAATCTCACTATGACCCCCCCC
GenBank Accession AL948600 [GenBank]
Graphic View Graphic view of gene At5g37080
Predicted Position of Insertion Chr5:14661682 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MJG14
Hit Gene Code At5g37080 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation  
Insertion Classification TS2TE
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37