SimpleSearch - Line and FST details
Line specific information
| Line ID | 315G08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N430224) |
| Segregation Analysis | 50:17:11 |
| Confirmed for Hit | At4g07950 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 12483 |
Gene hit At4g07950
| Sequence (A. th genome BLAST matches underlined) | >63-K015820-022-315-G08-8409 ATGCCATGTCGACTCTATGGGATCCTCCTATAGTGAGATTGCTCAAACCATTGCGATGGG ATCCTCCCTATAAAGAGGATTCGACTTTATCTCAACCCGACTCTCGATATTGGCAACGTA TGGACATGTGGAACAGAATAATCTCGAACTCCCACCTCCCTCGTATAGCAGCAGATTCCC ACATGTGGGACAAAACTCCATCTTCCACCTCAGCGATCTATTCGCTGCAGAATCATCCCC CACAAAAATCTATTCGTAAAACTATGATATATACAGATCTATATAGACAAACAGAGGGAA GGGGTGTTTTTAATACATTGATCTACTGTGTTCGTGTAACAACCAGCTTTTACTTTAATA GCAAGGCAGGACATGAAGCAACTTATAATTCAAGTAATCCATTCTTAACCGGAAATAACC AATACTTTTCCATAAATTCAACTTTACATTCGTTAGACTGTGGTTTAATAATGAAACCAA CTCCAGAATCTATGGGATCCTCCCTATAGCGAGACCCTTCGTCTATATAAGGAAGTTCAT TACATCGTGGAAAGGACCCGGTACCGGGCGGATCAGATTGTCGTTATCCGGCCTTCGGCT TAAACTATCATGGTTTGACAGGATATATTGGCGGGGCAAACCCTAAAGAGAAGAGCGGTT CATTAAAATAATCGGATATTTAAAAAGGCGTGGAAAAGGGTTATCCCTTCCGCCCATTTG TATGGGGCTGGCAACCCACAGGGGTCCCTCCCGGAAGGGGTTGGGATTTCCCGGCGATAA ATGACTTTTGGTCCACCCCCC |
| GenBank Accession | AL948841 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:4799072 - go to primer design |
| BLAST e Value | 5e-176 |
| Hit Clone Code (BAC ID) | F1K3 |
| Hit Gene Code | At4g07950 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | DNA-directed RNA polymerase, subunit M, archaeal |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g31719
| Sequence (A. th genome BLAST matches underlined) | >63-K015824-022-315-G08-8409 ACAGCGCTTATTCGAGATGCGTCATCTTGAGACGCTGATGTCTGACCCGTATGTCACTAA ATAGAAGGAAACGCTGACATTTCTCTCCACTCTGCAAGAGGAGTTGTATCTGGCACTTAC TGCAGATGAACTGGAGAGGGAACGGTTGGAGTTCTTGACTTTTTCAGATAACGAGCAGCG TTACCAGCTATCTATCATGAGCTTGGAAGGATTATTTGGTTTTCCTATGGGATCCTCCCT ATAGTGGAGACCTCCCTATAGTGAGAGTTTCTACTACACCGTACATCTGAGGTCGCCCGT GTACCAGCTCATACTGGAGTATCAGAGCACACTATGGACAATCGTTATACTTCTCACAAT CTCCTTCTTAGCCGATGATCCCTATAGCGTGTTTATACATTCAGCATAACATTCTTTAGA CTTGGGACATATACTGCATCCCTCTCCAACTTCCATTGGGATCCTCCCTACACTGAGCAA ATCACTGCCCCAATCCTCTCAATCCAGCTGTTCGATCTCCACTCCTGGAAGGCCGTGCAG CGTGTACCACTAAAGACGCTCCTTTTCCTCTCCCACTTTCGACCCCCCTATGTTTTATCG TCTTCTGATTCTTAG |
| GenBank Accession | AL948842 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:11691012 - go to primer design |
| BLAST e Value | 5e-68 |
| Hit Clone Code (BAC ID) | F28N5 |
| Hit Gene Code | At5g31719 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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