SimpleSearch - Line and FST details


Line specific information

 
Line ID 316H07
Vector Used pAC161
Line Availability available as T3 set from NASC (N430331)
Segregation Analysis 50:26:15
Confirmed for Hit At5g44300
Parent of DUPLO pair 3367
Parent of pair(s) none

Gene hit At5g44300

 
Sequence (A. th genome BLAST matches underlined) 
>56-K015853-022-316-H07-8409
TGATCTGTAATTTCCCGGACTGAAGCCTTTACATTGAATATATCCTGGTCTCGTTGCTAT
ACATCCTGTCATGCAGCAACAACAACAACAACCAAAACTACACTTTTTGTAATCAATAAA
AAAACTAATCGCAATTTAATTACAAGTTTTGTAACCCTTAATACCCATTGTTAGATTCAT
ATAAAAAATGTATACCTATAAGGTTAAATTGGATCTTAAAATCTATGAGATGCAACTATA
AAATTGATAATATAAATCATTTACCAGTCATAAACCGTAGGAGAATTAGGATGAGAGGGT
TTGTCAAAGACATTAACACCAATCTCCCTTGTGGTCACATTACTTGCCGGATGAAATACA
CTCCTCCACACATCCACTTTCCGACCAGATCCTGGTGTCACCGGAGTAACCGGACTCGCT
GGAAGAGATACCGATCCGGCCACTGACATTCCTTCTAAACCCCCACATATGTAACACTCC
GATTAGAGGAATGTATATATTTAAATGATATGACAATTACAACAATATGATATGATTTAA
TTATTGACTGTTTCAAAATTTCACCATGGTAACCCATTCTTTTGGGTAAATTTCTAATTG
CTAAAAAAGTTAAAAGAAATAAATATCATCAACTATATTCAGAAAGAATTAGTGGAACAA
AATTATTCCTTTATTCATTTTTCCGCTAATGCTTACTATTGCTTAATATTTTGGTTCACC
TGTGGTATTGTTCAAGCTATG
GenBank Accession AL948967 [GenBank]
Graphic View Graphic view of gene At5g44300
Predicted Position of Insertion Chr5:17845385 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) K9L2
Hit Gene Code At5g44300 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Dormancy/auxin associated family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL948967 [GenBank]


Last Updated on 10.06.2021 13:37