SimpleSearch - Line and FST details
Line specific information
Line ID | 318C08 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N430464) |
Segregation Analysis | 50:41:40 |
Confirmed for Hit | At5g54750 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At5g05980
Sequence (A. th genome BLAST matches underlined) | >59-K015855-022-318-C08-8409 TATCCTGTAGATTTCCCGGACATGAAGCCATTTACAATTGAATATTACATTGGTAATTTA CATGTAGATTTCATACTCACGCATCACAATTTTGTTAAGCTTCCTTATTAAATACAAACT TAATTGAATTAATAAAAAGTCTGGGTGGTGTAGTCGGTTATCACGCTATGGGATCCCCNC TATAGTGAGACCCCCCACCCCCCCCCCGCCCGTTGNGCTCTGCCTTTTTT |
GenBank Accession | AL949134 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:1804536 - go to primer design |
BLAST e Value | 6e-43 |
Hit Clone Code (BAC ID) | K18J17 |
Hit Gene Code | At5g05980 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | DHFS-FPGS homolog B |
Insertion Classification | Promoter |
Confirmation Status | unknown |
Gene hit At5g54750
Sequence (A. th genome BLAST matches underlined) | >59-K015859-022-318-C08-8409 TATCATGAAATTTCCCGGACTGAAGCCTTTACAATTGAATATTACATTGGTAATTTACAT GTACATTTCATACTCACGCATCACAATTTTGTTAAGCTTCCTTATTAAATACAAACTTAA TTGAATTAATAAAAAGTCTGGGTGGTCGTACGTCGGTTATCAGCACTATGGGATCCTCCC TATAGAGAGATCCAAACACTGAGCACAAACAAGTTCTGCACTTGATAATGGAGAAGGAGA CTGACCATTTCCAAAGCTCCTCTAATGACTCCACTTAAGACATTGCAGTAGTAAAGACCT TGGCAAGTATCGGGAAGCTCGACGAAATCAACTATGGGATCCTCCCTATAGTGAG |
GenBank Accession | AL949135 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:22243456 - go to primer design |
BLAST e Value | 4e-75 |
Hit Clone Code (BAC ID) | K5F14 |
Hit Gene Code | At5g54750 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Transport protein particle (TRAPP) component |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Last Updated on 10.06.2021 13:37 |