SimpleSearch - Line and FST details
Line specific information
Line ID | 319H06 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N430618) |
Segregation Analysis | 100:96:83 |
Confirmed for Hit | At2g28700 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Note |
Gene hit At5g38430
Sequence (A. th genome BLAST matches underlined) | >48-K015856-022-319-H06-8409 ATTTCCCGGACTGAAGCCTTTAATTGAATATCTTCCCACGTGGATCGATCCGTCGTACCA GCTTTGCAATTCATACAGAAGTGAGAAAAATGGCTTCTATGATATCCTCTTCAGCTGTGA CTACAGTCAGCCGTGCTTCTACGGTGCAATCGGCCGCGGTGGCTCCATTCGGCGGCCTCA AATCCATGACTGGATTCCCAGTTAAGAAGGTCAACACTGACATTACTTCCATTACAAGCA ATGGTGGAAGAGTAAAGTGCATGGTGACGGTGTTCGGCATTCTGAATCTCACCGAGGACT CCTTCTTCGATGAGAGCCGGCGGCTATGGGATCCTCCCAATAGTGAGANNNTNTATNCNC CCCACATACTCCTCTATCTTTGGANAAAAAGAAACAGAAAATTT |
GenBank Accession | FR807834 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:15385201 - go to primer design |
BLAST e Value | 6e-06 |
Hit Clone Code (BAC ID) | MXI10 |
Hit Gene Code | At5g38430 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Ribulose bisphosphate carboxylase (small chain) family protein |
Insertion Classification | TS2TE (5') |
Confirmation Status | failed |
Gene hit At2g28700
Sequence (A. th genome BLAST matches underlined) | >48-K015860-022-319-H06-8409 TATCCTGTAATTTCCCGGACTGAAGCCATTTACATTGAATATTTCCCGGACATGTAGAAT TCTAGAATGAGGAGGAACTCCCTTCAGCAATAAGAAGTGGTGTCATGCCTTCATTTACTA CAGTTGTTGCCATGGTTCCAGTTGTAGCGGTTGGTGCCATATCCATTAATGAATAAGATT CTCCGATTTCAAAATTTGGATTGGTGAGGGTTACATTTTGATGATGATAAAGATTTCTAA GATAGTGATCAATAAACTTACATAAGTCAAGACGATCATTATCATTCATAACAAAATCTC CCATGTTCCCACCATGACACTTGAACATGACCTCCTTTAAGCAAGTCTCCTTATTTTCTA CAATTAATTTCTTACTTTGCTTTTCGACTTTTGAGATGTATAGATTGAGAAATTCTTCGT GGTTCACCGATTTAACTTTCTTTTGGGTCTCCGGTAACATCTCAAATTTCTTGATGATAT TATTCACCTCCGATTGTGATGGCCACACATCTGGATCTGAGTTGAATGGATTGTACACGA CCGCACATGCATTAACATCGCATAAAACCTTGAGATCATTGAGTGTCTTCAGAAATCCTT CTCTCCTCTGCTTGAACGATCTTTTCCTCATTCGATCATTGAAAATGTAAGTTATATTTA ACTTTTTTCTTGCCATGACTACACTATGGGACTCCCCCCAATAAGAGAGAGGANCTTGAG TCCAACCCGGTAAAACACGACTTATCCCCACTGGCAGCAGCCACTGGTAACAGGAATAAA CAAAGCCAGGTATGTGAGGGGGGGCACAAAAATCTTTTGAAAGGGTGGCCTAACTACGGC TACCCTAG |
GenBank Accession | AL949325 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr2:12318104 - go to primer design |
BLAST e Value | 0.0 |
Hit Clone Code (BAC ID) | T8O18 |
Hit Gene Code | At2g28700 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | AGAMOUS-like 46 |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Last Updated on 10.06.2021 13:37 |