SimpleSearch - Line and FST details
Line specific information
| Line ID | 319H06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N430618) |
| Segregation Analysis | 100:96:83 |
| Confirmed for Hit | At2g28700 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note |
Gene hit At5g38430
| Sequence (A. th genome BLAST matches underlined) | >48-K015856-022-319-H06-8409 ATTTCCCGGACTGAAGCCTTTAATTGAATATCTTCCCACGTGGATCGATCCGTCGTACCA GCTTTGCAATTCATACAGAAGTGAGAAAAATGGCTTCTATGATATCCTCTTCAGCTGTGA CTACAGTCAGCCGTGCTTCTACGGTGCAATCGGCCGCGGTGGCTCCATTCGGCGGCCTCA AATCCATGACTGGATTCCCAGTTAAGAAGGTCAACACTGACATTACTTCCATTACAAGCA ATGGTGGAAGAGTAAAGTGCATGGTGACGGTGTTCGGCATTCTGAATCTCACCGAGGACT CCTTCTTCGATGAGAGCCGGCGGCTATGGGATCCTCCCAATAGTGAGANNNTNTATNCNC CCCACATACTCCTCTATCTTTGGANAAAAAGAAACAGAAAATTT |
| GenBank Accession | FR807834 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:15385201 - go to primer design |
| BLAST e Value | 6e-06 |
| Hit Clone Code (BAC ID) | MXI10 |
| Hit Gene Code | At5g38430 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Ribulose bisphosphate carboxylase (small chain) family protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | failed |
Gene hit At2g28700
| Sequence (A. th genome BLAST matches underlined) | >48-K015860-022-319-H06-8409 TATCCTGTAATTTCCCGGACTGAAGCCATTTACATTGAATATTTCCCGGACATGTAGAAT TCTAGAATGAGGAGGAACTCCCTTCAGCAATAAGAAGTGGTGTCATGCCTTCATTTACTA CAGTTGTTGCCATGGTTCCAGTTGTAGCGGTTGGTGCCATATCCATTAATGAATAAGATT CTCCGATTTCAAAATTTGGATTGGTGAGGGTTACATTTTGATGATGATAAAGATTTCTAA GATAGTGATCAATAAACTTACATAAGTCAAGACGATCATTATCATTCATAACAAAATCTC CCATGTTCCCACCATGACACTTGAACATGACCTCCTTTAAGCAAGTCTCCTTATTTTCTA CAATTAATTTCTTACTTTGCTTTTCGACTTTTGAGATGTATAGATTGAGAAATTCTTCGT GGTTCACCGATTTAACTTTCTTTTGGGTCTCCGGTAACATCTCAAATTTCTTGATGATAT TATTCACCTCCGATTGTGATGGCCACACATCTGGATCTGAGTTGAATGGATTGTACACGA CCGCACATGCATTAACATCGCATAAAACCTTGAGATCATTGAGTGTCTTCAGAAATCCTT CTCTCCTCTGCTTGAACGATCTTTTCCTCATTCGATCATTGAAAATGTAAGTTATATTTA ACTTTTTTCTTGCCATGACTACACTATGGGACTCCCCCCAATAAGAGAGAGGANCTTGAG TCCAACCCGGTAAAACACGACTTATCCCCACTGGCAGCAGCCACTGGTAACAGGAATAAA CAAAGCCAGGTATGTGAGGGGGGGCACAAAAATCTTTTGAAAGGGTGGCCTAACTACGGC TACCCTAG |
| GenBank Accession | AL949325 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:12318104 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T8O18 |
| Hit Gene Code | At2g28700 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | AGAMOUS-like 46 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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