SimpleSearch - Line and FST details


Line specific information

 
Line ID 325E06
Vector Used pAC161
Line Availability available as T3 set from NASC (N431158)
Segregation Analysis 100:94:71
Confirmed for Hit At5g17820
Parent of DUPLO pair none
Parent of pair(s) 6667, 6669, 6687, 76258, 76319, 76346, 76577, 76704, 76785
Note

Gene hit At5g23000

 
Sequence (A. th genome BLAST matches underlined) 
>45-K015984-022-325-E06-8409
GTCCATCCATACTCCATCCCTGGAGGAGATGAATTATATTCTCTAACAAAGGGATGACCT
CTTCCAACGTCAATTCTCTATTGAGGAGAATAGGCTGTAGCTCCAGGAAATTGCGATATC
TTTATGAACAGAAGGACTAGGGCATCTGAACAATACTGAGAACTTAGAGATTACATTGAA
AAGTATGGAAATGGTGGAAATTGGATCTCTTTCCCCCTCAAAGCCGGTAAGTTCATACAC
ATGTTCTTAATCCTATGGGATCCTCCCTATAGTGAGAGGACANNCCNANNGATTTNTTCC
CAATTCTTTTTCACTTCAAAAATGTAGATGCCCCCAATAGTTATTATAA
GenBank Accession CT026257 [GenBank]
Graphic View Graphic view of gene At5g23000
Predicted Position of Insertion Chr5:7696048 - go to primer design
BLAST e Value 4e-44
Hit Clone Code (BAC ID) MRN17
Hit Gene Code At5g23000 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation myb domain protein 37
Insertion Classification Promoter
Confirmation Status failed, line belongs to a contamination group, please check line 322E06

Gene hit At5g17820

 
Sequence (A. th genome BLAST matches underlined) 
>58-K033043-022-325-E06C-3144
CCTTCGCAGACCCTTCCTCTATATAAGGAAGTTCATTTCATTTGGAGAGGACAGGGTACC
CGGGGATCAGATTGTCGTTTCCCGCCTTCGGTTTAAACTATCAGTGTTTCTGTGGAAGGG
CATGCAGCTTCTAGCTGAGCCTTGATCCGGTCTATCAGGTCAAATTCCCTGACGCTTCCG
TTTGGTCCAGCAGTTTTCTCGGAATTGGTTGAATCAATGAGGAGAGAAGCGTCACAGCCC
TATCCGAACATAAAAATATTAAAATAAGATGATATAGACAAAATGATATGAAAATTCGCT
TAAGACCAATCATTACTATTTTAGATCATTTCATATATTTACAATTTTTGTTTAGTTTGT
GATTAAATATATCCTACTTAAAATAAAAAATAATAGTAATATATTAATATCCTATTTAAA
TTGAAAATTGAAAATTTTAGAAGGATAATAACATTTAAATTCACTTTGCACCTCCATTAT
TTTTGGACCAGTCTAG
GenBank Accession LN713421 [GenBank]
Graphic View Graphic view of gene At5g17820
Predicted Position of Insertion Chr5:5889227 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MVA3
Hit Gene Code At5g17820 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Peroxidase superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL950055 [GenBank]


Last Updated on 10.06.2021 13:37