SimpleSearch - Line and FST details
Line specific information
| Line ID | 326D01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N431237) |
| Segregation Analysis | 100:88:75 |
| Confirmed for Hit | At4g08310 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note | |
Gene hit At1g64860
| Sequence (A. th genome BLAST matches underlined) | >04-K015985-022-326-D01-8409 TGATCTGTAGATTCCNGGACATGAAGCCTTTAAATTGAATATATCCTGAGGAAACTGACC ATCTGATGTGCTTCATGTATCGAGGACAAGCTATTAAATTGAATTTACTCATTGATAATT ATCGTCGATGACGGTTTAGTAGACACCCTAAAAGAGACTCACTCTGAGATGAGTTTCTCC ACGGAGACTTTTCGAAGAAGGAATTGCATCTCTTCCTAAGGGATCCTCCCTATAGGGAGA AACTTCCCCAAGGAGGAC |
| GenBank Accession | CT026262 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:24100247 - go to primer design |
| BLAST e Value | 3e-11 |
| Hit Clone Code (BAC ID) | F13O11 |
| Hit Gene Code | At1g64860 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | sigma factor A |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
Gene hit At4g08310
| Sequence (A. th genome BLAST matches underlined) | >04-K015978-022-326-D01-8409 AAACCCGATCGGTTACAGATATTTCAGGTACAAAAGGTTAGAACGCCTGTGGCATATTCT AAGATGTCCGCTCGATATCAGTTCTCATCAAGCCGGGTTCGGATTAATATGGGTATAAAT TTTTGGGCACTATTTTGGAACTTAATGGCAAATATCCGCATTTATGACTAACATTTCCGG GTTTAAGCAGAATTCAAAGTTTCAATTAAGATATCCCGGTATTTTTAGTTCTGGGCCCAA GGTACGATTTTTCGGATACAATAGTTCTTGACCTCCATAGAGATAAACATCTAATTCAGA TTCGGCTCTAGATCCAACTTTTCGGTCCTATTTCGATTCGGGTTGTTGGTTTCGGGTTTT TTTCCCAGCCCTACTCATCACTTCTTCAGTCTGGGAAGCGAGGACATCCAACAGGCTAAA ATTAGCGGAACCACATGAGGACAAGGACGCTAAACTATCTAGGTTATTTGTGTGTTAATC AGCTTAATATAACTCTATACCCAACCAGAACTATAATAACCTTGGTATCCAGAACAGACT TTTTAATTGCCCTCCTTCAACGAA |
| GenBank Accession | AL950157 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:5252201 - go to primer design |
| BLAST e Value | 2e-104 |
| Hit Clone Code (BAC ID) | T12G13 |
| Hit Gene Code | At4g08310 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | DNA ligase |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g18610
| Sequence (A. th genome BLAST matches underlined) | >07-K020163-022-326-D01t-8409 AAATCCTTTCCGCCCTTCTCCGAAGCTGGCCCTATGGGATCCTCCCAATAGTGAGTAGCN AAGNTAAGNATGTATACAGCTGTCACCACGACGCCGATCAGCGGTCTTGTCGCTGCATCG CTCCTGTAAACACATTGCTGCAACTGCAAGTGCTCGAGATAAACCACTCATTGGATACCG CCCTAGCAGCGATGGATCCGCCATCTTCCGAAACTTTCTACAGATCTTTGAACAACGGCC TATGGGATCCTCCCTATAGTGAG |
| GenBank Accession | BX530868 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:6195084 - go to primer design |
| BLAST e Value | 2e-52 |
| Hit Clone Code (BAC ID) | T28N17 |
| Hit Gene Code | At5g18610 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Protein kinase superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 088H03 |
| Other FSTs Supporting this Hit | BX530867 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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