SimpleSearch - Line and FST details
Line specific information
| Line ID | 329D12 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N431536) |
| Segregation Analysis | 50:44:36 |
| Confirmed for Hit | At4g24973 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 68210, 96979 |
Gene hit At4g24973
| Sequence (A. th genome BLAST matches underlined) | >92-K016035-022-329-D12-8409 TTCATTGGGACTAACTGCAAATCGAAGGTAAAGATCTCGGACCTCAATCTTTAGCCCCTC ATCAACACTGGGGATTTACTGCATCTCTTAATGTTTGGGAGACGACTCTGTTTTTTTGTC ACTTTGTTTGGGAAAATCAGTCTATGGGATCCTCCCTATAGTGAGANAACAGNNCNNNGT NNTCCCCCCGTCTCTGCCAGGAAAAAACTGCCTACGTCGTGTCTATAACAAAAAATTTCC CTCATTGCCTACCAATATAGACTACCATGTTACACCCTCATTGGAAACCCGTTTAGCGTG AATACTTACGAATGGAGACAAAAGAATCTGGGAAATTCCCCAGATTCTATGTCTCTCCCT TCAGCTTGAGAACCGGAAGGATAACATCGAATTTATCTTGAGTTTTTCCTTAGAATCTCT CTTTGATTGTTCCATGTCTCATAAAGAAAATCGCAAATACCCAATCGTGATGCAATCTNT AGGATCTATCTATGTGTCAGTAGATGCCGTCCAATTGCCTTTGCGATCTTTCCCTATAGT GGAGATATTTTNTCCTTTTTTTTTGATTTCCCCCACCCCCTTAACGTGGTCAAACCTCAC ATAATCGCGTCTCATCCTCACATCCACCC |
| GenBank Accession | AL950557 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:12841095 - go to primer design |
| BLAST e Value | 4e-53 |
| Hit Clone Code (BAC ID) | F6I7 |
| Hit Gene Code | At4g24973 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Plant self-incompatibility protein S1 family |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g60220
| Sequence (A. th genome BLAST matches underlined) | >92-K016044-022-329-D12-8409 ATGTTCAATTGGGACTACACTGCAAATCGAAAGGTAAAGATCTCGGACCTCAATCTTTAG CCCCTCATCAACACTGGGGATTTACTGCATCTCTTAATGTTTGGGAGACGACTCTGTTTT TTTGTCACTTTGTTTGGGAAAATCAGCCTATGGGATCCTCCCTATAGTGAGAGAAGANAN NACCGNGTGTAAGTGCTTCTCCTCCCGCAGCATGGGGGACTGACCTCCGGAATCATACCA AGATGGAGACNTGCTGCCATTTGACCATTGCCTGGGATAAACCGCATGAGAACAGTGCAG CCTCCTTCAGCCAAAACGTTACGAAACTTGATCATCTTGTCTGCCTCGGGCTGTATGAAC TGAGAACCACTGTGTGGGTTGAATTGAATAAGGTTGATCTTGCATGGAATCCCCTGCACA AGCTCCACTA |
| GenBank Accession | AL950558 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:22212114 - go to primer design |
| BLAST e Value | 6e-86 |
| Hit Clone Code (BAC ID) | T13D8 |
| Hit Gene Code | At1g60220 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | UB-like protease 1D |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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