SimpleSearch - Line and FST details


Line specific information

 
Line ID 330C06
Vector Used pAC161
Line Availability available as T3 set from NASC (N431614)
Segregation Analysis 50:45:35
Confirmed for Hit At4g35670
Parent of DUPLO pair none
Parent of pair(s) 2803, 67670, 96727

Gene hit F10A16

 
Sequence (A. th genome BLAST matches underlined) 
>43-K016036-022-330-C06-8409
TGATCTGAAATTTCCCGGACATGAAGCCATTTACATTGACCTCTGCACGACGCCCTTGGT
CCATTACATGGAACAACATGCGGTGATGGGCATGATATCAACATTATTATATACTCGTTC
TCCCCTCACACTGGGCCGATACTTAGGTAAGCTGCCTCTCTTAATTATGCATACTCTCTC
TCTGAGCTACCAAGATCAGTAGAAAATATTTAACTTTCTTTTGTCGATACATTGTTGAGG
AATACCCNCACTCCTAAGAAGCATTTGTAGAGCGAGTTTCCTATACGACATCTATCAACA
TGACCTCTAACCAAAAAAATATTGATGAAACTACTTTAAGTAGTAAGACCTAAAGCAATT
AAAATTTCCTTTAAATTAGGAGGTCGTGTAAATTAATTGACATGATTGCGTCGAAAGAAA
TCATAACAGTTATATCGTGAACTTAGGAGAATGCTTTATATCGTGTCTTCAACACATGAT
TGCTATGGGATCCTCCCNATATAGTGAGACCAGATGATTTGATTGTCTCCAAGTGACCCA
GCGCTGGCAATGCTTTGAGTCTGCAACAGTCACGAAAAGGTGGTGTATTTCTGCCTGGCA
GCCTTATTCGTGGTTTCTGGTAAAGTCTCAAAATCATTGCCACTCCAGTCCAGTTTCTCT
A
GenBank Accession AL950657 [GenBank]
Graphic View Graphic view of sequence AL950657 of line 330C06
Predicted Position of Insertion Chr3:1768522 - go to primer design
BLAST e Value 7e-89
Hit Clone Code (BAC ID) F10A16
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At4g35670

 
Sequence (A. th genome BLAST matches underlined) 
>43-K016045-022-330-C06-8409
TATCCTGAAATTTCCCGGACTGAAGCCATTTAAATTGAATATCTGCTGATTACTTGTATC
ATGTGGAAAAACCAACTGTGGAGAATTTCATCAATGCCAACAACGGGTACCTGGAGATAT
TCCGTTGAAATTTGTAGAGGCCGATTGACAAATGTATTTACATGGACTGGACAACACACT
CGTTAACACAACAAATCCAATTATAATCGTACCCACATTATATACATAAAGGACGTCTTA
CACAGGTAAATACTTTTTCAATAATTTATAAATACAAATATATTTATATTAATACTAATT
TTGAAAGTATCATTAAATTGTGAAAATATATGATTGCATGTGTTTATGTTCAACAGGAAT
CAGCAGTAGCTATTAGTAATGTAAAATTTGTCGATTTTCGCGGAACATCGTCAAATAAAA
ATGCTATAACGCTTAAATGTAGCGAAACTACACATTGTGTAGACGTCGTTATGGATGGAA
TTGATATTACCATGGCAAATGGAGGAAAGCCTAAAGTTAATTGTCAATATGTTGATGGAG
AGTCCAGTGACACTGATTTGATGCGAGACTGCTTTAAAAATAACACTATGGGATCTCCCC
CCNTTAAGTGGGGGANACNGGNAANGNCTCAAAATCCTTGCCACTCCAGTCCA
GenBank Accession AL950658 [GenBank]
Graphic View Graphic view of gene At4g35670
Predicted Position of Insertion Chr4:16916664 - go to primer design
BLAST e Value 2e-160
Hit Clone Code (BAC ID) F8D20
Hit Gene Code At4g35670 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Pectin lyase-like superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37