SimpleSearch - Line and FST details


Line specific information

 
Line ID 331D10
Vector Used pAC161
Line Availability available as T3 set from NASC (N431726)
Segregation Analysis 50:49:47
Confirmed for Hit At3g16100
Parent of DUPLO pair none
Parent of pair(s) 4996, 5060, 5075, 8587, 10215, 94975, 94977

Gene hit F6F22

 
Sequence (A. th genome BLAST matches underlined) 
>76-K016046-022-331-D10-8409
ATGAGCCTTTACATTGACCAAAAGAGAACGTAATAATCACTATTTGAATTTGAGACTTTT
GAGACCTCATCCCTCAAGGTCCCAATCCCCTACCTATGGGATCCTCCCTATAGTGAGAAG
GNCCAAATTGATGACAGAATCTTCACTTTGCAGGTAATCACCATGTGTGTTATCTAATTA
TATATATAATGTGACTGATGAGTTTTAGAAACACACACTTTATTTTACATACATACACTA
TGGGATCCTCCCTATAGTGAGACTTGAAGCTGAATCCGCGCTGGCTCTGATCAAAAGCTT
CATCTCGGCATCAATGTTGCAGGTGAGTTCTTCTTGGTACCATAAATATATCTTGCGGGC
CAGATGTATGTTGTGATTAACCGTCCACCTTACATCTATGTTTCCGACATATTATAAATT
TGCACTTTGACTTTGTATCATCATAGAACCCGGTTGACCTATATATGGCGAAACCCACTA
AGCGAAAATATTAATA
GenBank Accession AL950797 [GenBank]
Graphic View Graphic view of sequence AL950797 of line 331D10
Predicted Position of Insertion Chr2:8560570 - go to primer design
BLAST e Value 8e-61
Hit Clone Code (BAC ID) F6F22
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At3g16100

 
Sequence (A. th genome BLAST matches underlined) 
>76-K016037-022-331-D10-8409
TATCCTGAAATTTCCCGGACATGAAGCCATTTACATTGAATATACTTGGAGCTACCATTT
TATTTCCATTTACAATTTTGTGAATCGAAAATTCAGTAATCAGTATAAAGCTACCATTGG
AGCTGATTTCTTGACCAAAGAGGTCCTAATTGATGACAGAATCTTCACTTTGCAGGTAAT
CACCATGTGTGTTATCTAATTATATATATAATGTGACTGATGAGTTTTAGAAACACACAC
TTTATTTTACATACATGACTCTATGGGATCCTCCCTATAGTGAGATTCATCGACTAACAC
ACACTGCAACAATAAAGCCCTCTTTGCGTAAGAATAAAAGCTATGGGATCCTCCTTATAT
TGAGAATCCGCCATACTGCAGGGCTAGATAGGTGCCAAATGTAGGCCGTTGCTGTCTACC
GATGATCGGACTGGTGTGAACTTGTCGATGATGCTCATGTCATCAAATCCTGTGACAATC
TTAACAACTGGAGGAACAAGTTTCTGATGCATGTACAAGCTCGTATCACTGATTCTTCTG
GAATATGATCTGCCATATACTATCAGTGAGTGAATAATATCTTT
GenBank Accession AL950796 [GenBank]
Graphic View Graphic view of gene At3g16100
Predicted Position of Insertion Chr3:5459520 - go to primer design
BLAST e Value 2e-92
Hit Clone Code (BAC ID) MSL1
Hit Gene Code At3g16100 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RAB GTPase homolog G3C
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37