SimpleSearch - Line and FST details
Line specific information
| Line ID | 333B07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N431891) |
| Segregation Analysis | 50:41:24 |
| Confirmed for Hit | At3g05170 |
| Parent of DUPLO pair | 92 |
| Parent of pair(s) | none |
Gene hit At1g12480
| Sequence (A. th genome BLAST matches underlined) | >50-K016060-022-333-B07-8409 GATCATGTAGATTTCCCGGACATGAAGCCATTTACAATTGAAGCCATCTACATGACCAGC AGTTTATTGTCCGGACTCATGGATGATTGGAAAACGGAGAAAACACTTTTCTATGGGATC CTCCCTATAGCGAGAGTGTCAGATTATCGAATTGCTCTGATGCATGGAGAGGAAACACTC AAATGCTCATTCCACTTGCGCCGACATCAATGAACTTGAAGACGACTCCGAGCGGGAACT GCACCAGCAAGAGAACAACATGCAACTCGAAATTCTCGGGAAGCAGAGGACCCAACCGAG GGAAACAAAGACCATTCAAAGGGTTTAGCAAACAGGTTGCACTATGGGATCCTCGCGATA GAGAGAGGTGCACTAGAATCTCATTACGTAAGATGCGTCGATCTTGACGTTGACTCGACT TGTGACCTATGGGATGCTCACGACAGTGCGATTGATACTCGCTGGGGAAACCACCGTGAC GTGCGTCTGCATGCGCGACGAATATTATCTCCTTGTCATAGACGTCGAGCAGACTCTATG TGATCTGCTCCACAGTCAGTACGGCGAGTTCTGTTAGGGCCTCTATTTGAATCTATGACT CCATGGGAATTGGGGATCCCCTA |
| GenBank Accession | AL951029 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:4259354 - go to primer design |
| BLAST e Value | 4e-47 |
| Hit Clone Code (BAC ID) | F5O11 |
| Hit Gene Code | At1g12480 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | C4-dicarboxylate transporter/malic acid transport protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
Gene hit At3g05170
| Sequence (A. th genome BLAST matches underlined) | >50-K016065-022-333-B07-8409 TGTCATGTAGATTTCCCGGACATGAAGCCATTTACAATTGAAGCCATCTACATGACCAGC AGTTTATTGTCCGGACTCATGGATGATTGGAAAACGGAGAAAACACTTTTCTAGGGGCAC GACGCTTTTTTTGCTCTCCCACAACCCCGTTTTCACGGATTAAGCTGCTCCCATTTCGCT CGCCGCTACTACAGGAATCGCTTTTGCTTTCTTTTCCTCTGGCTACTAAGATGTTTCAGT TCGCCAGGTTGTCTCTTGCCTGCCCATGGATTCAGCAGCAGTTCAAAAGGTTAACCTATT CGGGAATCTCCGGATCTACGCTTATTTTCAACTCCCCGAAGCATTTCGTCGCTTACTACG CCCTTCCTCGTCTCTGGGTGCCTATGGGATCCTCGCTTATACTGAGAGTTACATCAGCCC CTTGGCGAGTGCTCTTCCTGAGACTGGATCTGTACATATTTTTGCAGCAAACATAGCGTG ACGAGCTCCGATCTGACGACTTAGAATTTCTCCTTGTCATGGATACAAAATACACTCTGT ATGAGGTGCTCGCCACACATTACGGAGAGTTCCGATAGGATCTCTCCTTAGAATCAGTGA CTCCATGGGAATTGGGGATCCTCTA |
| GenBank Accession | AL951030 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:1466760 - go to primer design |
| BLAST e Value | 2e-24 |
| Hit Clone Code (BAC ID) | T12H1 |
| Hit Gene Code | At3g05170 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Phosphoglycerate mutase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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