SimpleSearch - Line and FST details


Line specific information

 
Line ID 334B02
Vector Used pAC161
Line Availability available as T3 set from NASC (N431982)
Segregation Analysis 50:40:39
Confirmed for Hit At5g23160
Parent of DUPLO pair none
Parent of pair(s) 11793

Gene hit At1g74990

 
Sequence (A. th genome BLAST matches underlined) 
>10-K016061-022-334-B02-8409
TGATCCTGTAGATTTCCCGGACATGAAGCATTTACATTGATTCCTAGATGTATTAGANGG
GCGATGCCTTATTATGAAAGAGCGTTTATTAAAATAATCTGATGATTTAACACAGGGCGT
GAAGAGGTTATATCCGTTCGTCCAGTTTGTATGTGCATGCCAACCACACGCGGTTCCCCT
CGGGAGTGCTTGGCATTCCATGCGATAATGACTTCTGTTCATCCACCCAGACGTTTGAAA
GCCTGACGACAGATGAGCGTTCCAAAAACATCCCTTGGATCAACTGGGACGGCTATGGGT
AGCCTGGCCTCTAGCGAGAGGATCCTCCCTTATAGTGAGATTATTGTTTACAACATTTGT
CCAATTATTAAAGTCAAACAATTCATAAACTGTTTACACTAAAACTTGTGATTTTGACGG
TTGCGGGATTCTATGGGATCCTCCCTATAGTGAGAGAGCTTATGTACATACCATTACCAA
TACTTATGGGATGCTCCCTGTGGTGAAGCTCCTATGGAATCCTACCGATATAGGGGAATG
GCCCCGATTTTGACTTATCCTAACTACTACGTGCAGGAGCCCTCCCGCCGCGACGTCCCG
GTGCATTACCCCTGCGCGACAGTTGTCGCGGCAACCCGCGTACTTAATCCCGCCGAATTT
TCTATCGCGATTGCACCAAATGGTCCTAAATTTCCTCAGCGGTGCCCACCCCCCCTTCAT
CCACCACTGTCTAGCTGTNCGGCAACTCGGGAAAGCATATTCCAACCGAAATAAAAAAGC
CGTATCCGAAGTGGCGCCGATCCAAAATCGGACG
GenBank Accession AL951150 [GenBank]
Graphic View Graphic view of gene At1g74990
Predicted Position of Insertion Chr1:28160628 - go to primer design
BLAST e Value 9e-42
Hit Clone Code (BAC ID) F25A4
Hit Gene Code At1g74990 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RING/U-box superfamily protein
Insertion Classification Promoter
Confirmation Status unknown

Gene hit At5g23160

 
Sequence (A. th genome BLAST matches underlined) 
>10-K114400-0022-334-B02-8409
AAANTAAGATTTCCGAATTAGAATAATTTGTTTATTGCTTTCGCCTAAAATACGACGGAT
CGTAATTTGTCGTTTTATCAGAATGTACTTTCATTTTAGTAACAACGCTGCGGACATCTA
CATTTTTGAATTGAAAAAAAATTGGTAATTACTCTTTCTTTTTCTCCATATTGACCGTCA
TAGACATTATCGTGACCATTGTATATATAGGTTGAATCTGTTCGCAAATTGTTTGTGGTA
GCATATGAATCTCCCTACCCAACCAACAACAAGTCGGAAGGTCCAAAGCTCGGGGCCTCG
GGCCTCGGGGTTCNGGTGNANACATGCCCAACCCNAACGATATGTGGTAATTCTATTTGT
GTTTACAAATTATATAACATGTATTTGTGTTAATAGCCTAACCTGCCCCGCCGCTATNGA
TAANGGGGTAAAAGATATCTTTCTCATTGTTGAAATAGTTAGGGTCGGTTCTCAAGTAGA
TTGTGGGGGCAAAGAAAAGACACAGCGGGACCAGCGTAATGTTGAGTGTGTTTTATGCGG
GCGGGCACCNGTGCTATGGGGTTGGTGGAAGAAAGATGTAAACAAAAAGGTGGGGGAAGT
GGGTGGGGGTGAAGGAGAAGAAAC
GenBank Accession HE664546 [GenBank]
Graphic View Graphic view of gene At5g23160
Predicted Position of Insertion Chr5:7796337 - go to primer design
BLAST e Value 3e-75
Hit Clone Code (BAC ID) MYJ24
Hit Gene Code At5g23160 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation transmembrane protein
Insertion Classification TS2TE (5')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit HE664546 [GenBank]


Last Updated on 10.06.2021 13:37