SimpleSearch - Line and FST details


Line specific information

 
Line ID 334D05
Vector Used pAC161
Line Availability available as T3 set from NASC (N432009)
Segregation Analysis 50:49:45
Confirmed for Hit At5g13150
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit F28P10

 
Sequence (A. th genome BLAST matches underlined)
>36-K016061-022-334-D05-8409
TGATCTGAAATTTCCCGGACATGAAGCCATTTACATTGAATATGTATATTGCATGTACAC
TATTGTTTACATGTACGAGACACTTCGTGATTTGATTCCTGCGGCGGAACAATGCGTGAT
TCAGATTTGATCCATTGAGATGTAACACTGGCTCAAACGCGGTTATGGGATCTCGNCTAT
AGAGAGAGTGCGATAATGACTTCTGTTCAACCACCCAAACGTCGGAAAGCCTGACGACGG
AGCAGCATTCCAAAAAGATCCCTTGGCTCGTCTGGGTCGGCTATGGGATCCTCCCCTATA
GTGAGACNNNNNNNANGNNNCNNNANCNNCNNACGACNNCNNNGNATNCGANATGANATT
CAGAAGCGATGCACCGGCTCGGCCGCGATTAACGTTATTGTTTTCTTTGTTAATGATTTC
GGTTTTGTCGTCAACTCATCATCAAAGAAAATGTAAAAATGTTGTAAGCTTGTAAACACT
AAATTCCTACCAAGTTTTGCAATAGATGCAATGAACAGCACTAAATTTATCTTCTATCAC
ATGATCTCGTCAGGGACGTGTGGAGTACTATTCCCGGTCGCCATTTACAAGACACCAAAA
AGAAAGAACACCGAATAAATAAATTATTAGAAAGTTTCTAAAAAGACTTACTGTCTGAAA
AGAAAGATATAGCTAAAAAACAGTCCTCAATGAGAATTAGTTAGCAGCTA
GenBank Accession FR808115 [GenBank]
Graphic View Graphic view of sequence FR808115 of line 334D05
Predicted Position of Insertion Chr3:20350446 - go to primer design
BLAST e Value 2e-169
Hit Clone Code (BAC ID) F28P10
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g13150

Sequence (A. th genome BLAST matches underlined)
>36-K114399-0022-334-D05-8409
ACGCTTCGTGATTTGATTCCTGCGGTGGAACAATCTGATTCAGATTTGATCCTTGATATT
AAGCTGGCTTCATATTCGGCTAACCCGCCCGGCCTCTACNTTTTTGAATTGAATGACATT
TGGTCATTACTNCTTTCTTTTTCTCCCTATTGACCATCATACTCATTGCTGATCCTTGTA
TATTTCCCCGACATGAGCCCATTTACCATTGAATATGTATATTCATGTACATATTGTTTA
CATGTACTAAACGCTTCATGATTTGATTCCTGCGGTGGAACAATCTGATTCACATTTGAT
CCATGATATTAAACTGGCTCAGACGCGGCTAACCTGCACGGCCGCTAAAAANNNTGNNNT
NNTNNCTTCTGTTCAACCACCCNNNCNTCNGANNNCCTGACGACGGAGCGGCATTCCGAA
AAGATCCCTTGGCTCGTCTGGGTCGGCTAACCTGCCCGGC
GenBank Accession HE664572 [GenBank]
Graphic View Graphic view of gene At5g13150
Predicted Position of Insertion Chr5:4174167 - go to primer design
BLAST e Value 2e-30
Hit Clone Code (BAC ID) T19L5
Hit Gene Code At5g13150 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation exocyst subunit exo70 family protein C1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details