SimpleSearch - Line and FST details
Line specific information
| Line ID | 334F09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N432037) |
| Segregation Analysis | 50:40:39 |
| Confirmed for Hit | At4g20720 |
| Parent of DUPLO pair | 12219 |
| Parent of pair(s) | none |
Gene hit At4g20720
| Sequence (A. th genome BLAST matches underlined) | >70-K016066-022-334-F09-8409 ATTGCTCACCTCCGACGACTATTGCTCTGACTCATGCTTCCCCAGCCTTCCCGAGTCCGA GGAGGCTATCGCAGAACTTGATGCTTCAGCTCCCTACCTTCGTTGCCGAAACTGCAAAGG AAAACTTTTACGAGGAATCGAGTCTCTGATCTGTGTCTTCTGTGGAAATCAGCAACGCAC GAGTGATAATCCTCCTGATCCCATCAAATTTACTTCCACTTCTGCTTACAAATGGTTTCT CACCTCTCTTAATCTCGATGGATCGGTAAAAGTCGATACCTTTCTCACTAATTTGTAATT ACTTGTTTTCCTATGGGATCCTCCCTTATAGTGAG |
| GenBank Accession | AL951229 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:11105474 - go to primer design |
| BLAST e Value | 4e-158 |
| Hit Clone Code (BAC ID) | F21C20 |
| Hit Gene Code | At4g20720 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | dentin sialophosphoprotein-like protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g11600
| Sequence (A. th genome BLAST matches underlined) | >70-K114399-0022-334-F09-8409 CCCCATTTGGACGTGAATGTAGACACGTCGAAATAAAGATTTCCGAATTAGAATAATTTG TTTATGTCACAATCTTTGTAGGTATAATTGTTCATCAATTACTTTAAGTATTAATGCCAC AATAGTATATAGTTGTAGATATTTGTGTGGACAGTCTAACCTGCCC |
| GenBank Accession | HE664596 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:3903742 - go to primer design |
| BLAST e Value | 1e-40 |
| Hit Clone Code (BAC ID) | F25C20 |
| Hit Gene Code | At1g11600 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cytochrome P450, family 77, subfamily B, polypeptide 1 |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
Gene hit At1g73680
| Sequence (A. th genome BLAST matches underlined) | >70-K016061-022-334-F09-8409 TCACGACTATGATACGAATAGACTATCCCATGGCTAATTAATTATTTATTGAAAGTTTAC TCTATGACTTATTTAATATCATGACATATTCAAGATTAACTGGACATACATACATATGTA AATGTGAATATGCGTGCGGGTCTATATCAATACTTGATAGCATGCGTGAGAATACTACCA TTACAATTGTGTGACTATCATTTACAGAATATAGCCAACGCATGATCCAAAGAAGATAGA TATGGAGACAGGATAGATGCATGGATACATATGATTTTCTCTCCCTCCTCTTCCCGGTTG CTCCGTCCGCATCATTATCTATGTCGATGCCATCATGCCTTTACTTGAGTGCTTTTTTGT TCTATGTAAATACATCTCTCTCTTTAACAAGAACATAAATACATCTCTGATCTCTCTATC TCTCTAAATATATGAACTATATATGCTTTTCTTCTCTTAAGAAAATAAGTTATCATATCG CTTTTATAATTTTTCTTATTATTTTGTTAATTTGATCGTTTAAAAAAAATTATATATACA GATTGTGCACTTAGTGGACAAGCTATG |
| GenBank Accession | AL951228 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:27707687 - go to primer design |
| BLAST e Value | 2e-67 |
| Hit Clone Code (BAC ID) | F25P22 |
| Hit Gene Code | At1g73680 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | alpha dioxygenase |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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