SimpleSearch - Line and FST details
Line specific information
| Line ID | 334G08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N432048) |
| Segregation Analysis | 50:45:43 |
| Confirmed for Hit | At4g21060 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 1593, 3555, 3605 |
| Note |
Gene hit At4g21060
| Sequence (A. th genome BLAST matches underlined) | >63-K114399-0022-334-G08-8409 CCCCATTTGGACGTGAATGTAGACACGTCGAAATAAAGATTTCCGAATTAGAATAATTTG TTTATTGCTTTCGCCTATAAATACGACGGATCGTAATTTGTCGTTTTATCAAAATGTACT TTCATTTTATAATAACGCTGCGGACATCTACATTTTTGAATTGAAAAAAAATTGGTAATT ACTCTTTCTTTTTCTCCATATTGACGTCTCATGTTTAGATCCATTAATCTTCTCTTCTGG TGACACCTTCTGAGTAGTAGAAGGCCCACTTTGATGATCTTCATCTTCTAACCTGCACGG CCGCTACNNNNNNNNNNNGGNTGCNGNCTGGCAGAGACGCTATNAATTTNNNTNTCTTCN TNNTNGGGTGTCNGTTNGCTGGGCNCTGGNNTCCGNGGNGGTTTTCGGNTNTTNCCCTTT GTTGCCCCGTCTCNNTTGCCCTTTGGTCTTCTGNGNCTGTNTCTTTGTTTTTTTTGGNNG TGNCNNGCGTGTCGTGCTCCGCCGTGTTGCCNNNGGTTTTCTTCTTGTGCTTGNNTCGTN NTTGTCTCTGTTTGGCCTGTTCGCCNGTCTTTNCGGCNNGTTCTTGTTGGTCCTCTTTTT GTGGCTTTGGCTCCCTGGNGTTTGGGGCTCCTCT |
| GenBank Accession | HE664604 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:11242500 - go to primer design |
| BLAST e Value | 5e-37 |
| Hit Clone Code (BAC ID) | T13K14 |
| Hit Gene Code | At4g21060 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Galactosyltransferase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | HE664605 [GenBank] HE664605 [GenBank] |
Gene hit At1g02250
| Sequence (A. th genome BLAST matches underlined) | >63-K016061-022-334-G08-8409 GATCCTGTAGATTTCCCGGACATGAAGCCATTTACAATTGGTGAAGTGACTTAAGTGCAC TTTTTCATTTCAATTGAAGTGAAAGGATGAATTACTCTTTCATTTCGTCCAATTCTGGTG CGCTTAGTCACATAATTTCTTTCCTACCAAGAAATAAACGAACAATTCTGGTGCACTTTG ACTTAAGTGGGTAGGGTATTGAAGTGGGACCAACAATTCTGGAGTTTTGAGTGTAGAGAC AGAGGTGAGTCAATCTCAAAAACTTTCCCTGTTTCTCTTTTAAATCTTCAAAATCATATC TCGTACACATAGTTTTTTCATCTGTGTTACGTTGTTCCTTTTTTCAGGGATCGTTGTTTC ACAGCCAAGAATCACAGAATCCAAGTCAGTTTTCTGGCTTTCTTGATGTGGATGCGCTAT GGGATCCTCCCCTAATAGTGAGANNNNCNNNNCNNNNCNCNCCCCCNTNNCCCCCCCNCC NNCNAAAACGGCCTCCTCCATCTTTTTATCATACACTACCCCCTCTTTCCCCACCATTTT CACCTAAACTTCCTTCTCTGTCATTGACTCCTACAACACTCTGTATAAACTGATCCCCAG TCCTTACCGACAAGTCTGATAACTCCTTCTATTTGAATCTTTGAATTCGAGGCAATTGGC GATCCGTCATGGGATCCTCCCCCAAACGAGCCCCCCTACTCTGCGGTGCGCTAACGACGA CAACCCGGACACAGATACTACCATTAACAGACACCTATACAGTGGGACCGGTTCCTTAAA CCGAGGCACGAAACCCACCCGCAACCAACCCACGGAGCTACACATTCCACAACAACCAAA CACTACCACAC |
| GenBank Accession | AL951242 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:438968 - go to primer design |
| BLAST e Value | 2e-113 |
| Hit Clone Code (BAC ID) | T7I23 |
| Hit Gene Code | At1g02250 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | NAC domain containing protein 5 |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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