SimpleSearch - Line and FST details
Line specific information
| Line ID | 334H07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N432059) |
| Segregation Analysis | 50:48:45 |
| Confirmed for Hit | At3g04010 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 999, 5413, 5426, 5431, 8665, 79037, 79047, 79048 |
| Note |
Gene hit F11A17
| Sequence (A. th genome BLAST matches underlined) | >56-K114399-0022-334-H07-8409 TGTTACCACATTCTCTCTGTTAGGATTCTAGACATCATGCATCTTCATTTTATCCATAAC TCGTTCTGCATCTCCAACTTTCTCAACTGAACAATAATTGGTTTATACCCTTTCGGCTTC ACCCTATAGACATCTACACCTAATTCAGAGCCAAGACGTTGAAATTGACACGACGAAAGG GCTATCATAGGGATCATTGTAAATATCAGATCGAGAATCCAAGGAAGTCACGAGGCGGTG AAGGGAGGTTGGCTAACAGTTACATAATTGAGGTTTGTAATTAAAATTGTGTGAATAAAA GAAATAAGAGTTAGGGTTCTAAAAAGACTCTATAGATAGAGTTGAGGTTGATTTTGGCCA ATTTCTAACCTGCCCGGCCG |
| GenBank Accession | HE664614 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:17818846 - go to primer design |
| BLAST e Value | 2e-116 |
| Hit Clone Code (BAC ID) | F11A17 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At5g24100
| Sequence (A. th genome BLAST matches underlined) | >56-K016061-022-334-H07-8409 TTTCCCGGACTGAAGCCTTTACATTGAATATATCACGCAAATCTAGTTTCAACTTATCTG GTTTTGGTTCTGTCTCTGACTTCCTCTGCCTGTTCACATAGCAAACGATTATCACAACCG CGATTACAAAGAATATCACGAAGCAAACGCTAATCGCTATCCCGAGAATCGCGGGTTCAG AGATATAGATGCCGTTTTTCTTTTGCTCTTTGAATGAAACTACCGCCGGAGGAGGGGCAT TTTCGAAGACTAAGTTGTTGCCGGAAAAAGCCGAGTTCCCGAATCTTTTCAGAGAATTTG GGATTGATCCGGTGAGATTGTTGTTGGAAAAGTTAAGTCTGCGTAGACCGGGGAGATTAA GATCCGGAATCTCACCGGAGAATGAGTTTTTAGCTATGGGATCCCCCTTAATACGGAGAT AGATAGAGTTGAGGTTGATTTTGGCCATTTTCTA |
| GenBank Accession | AL951257 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:8150095 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | MZF18 |
| Hit Gene Code | At5g24100 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Leucine-rich repeat protein kinase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
Gene hit At3g04010
| Sequence (A. th genome BLAST matches underlined) | >56-K114400-0022-334-H07-8409 AACAGAGTGCTATAACTAACTCTGCCGTTGTCTTTATCATCATCTCCGCCGTATGTTTTC ACTCCGGCGGTGTCTCTGGTTTGGGAGTAAACTCGGGGAACAATGGCGAGTCATCACATT ACCGCCTAAGACAGTGGTGGAGATGCTTAAATACAACAATATACTTAACGTGAAGTTGTT CGATGCCGACTCATGCTCCATGTGAACTCTCGCCAGCTCCGGCGTCTAAGTGATGGTGGC TATCCCTAATGATCTAGCTCTGAACCTGCCCCGCTGCTATTGTCTTTATCATCATCTCCG CCGTATGTTTTCTCTCCGGCGGTGTCTCTGGTTTGGGAGTAAACTGGGGAACAATGGCGA GTCATCAGTTACCGCCGAAGACGGTGGTGGAGATGCTTAAAGACAACAATATACANAAAG TGAAGTTGTTCGATGCCGACACAAACACCATGGGAGCTCTCGCCGGCTCCGGCGTCGAAA TGATGGTGGCTATCCCTAATGATCTGCTCAAAACCTGCCCGGCCGC |
| GenBank Accession | HE664615 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:1039497 - go to primer design |
| BLAST e Value | 5e-123 |
| Hit Clone Code (BAC ID) | T11I18 |
| Hit Gene Code | At3g04010 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | O-Glycosyl hydrolases family 17 protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | HE664615 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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