SimpleSearch - Line and FST details


Line specific information

 
Line ID 335F03
Vector Used pAC161
Line Availability available as T3 set from NASC (N432127)
Segregation Analysis 50:34:33
Confirmed for Hit At2g39840
Parent of DUPLO pair none
Parent of pair(s) 7527, 7536, 7538, 7542, 8629, 9266, 9268, 11569, 83717, 83769, 83791, 83798, 83805, 83806

Gene hit T18A10

 
Sequence (A. th genome BLAST matches underlined) 
>22-K016062-022-335-F03-8409
GATCCTGTAGATTTCCCGGACATGAAGCCATTTACAATTGAATATATCCTAGTTGCGACA
TTCTATAGATAACAATATGAGCATACATATTTATGTAGAGATTAGTTAGTAAACACTTCT
CAATTATAAGCTACAAATTCACACACTCAAGCATAAACACAAACAAAATTACACACCACT
CTCATAGATCACCAATAAAAACTGAAAAAGTTATGGTTCTTTTTGTCAAATTGCTTTTAT
TTATATGTGACGCCTCAAACTCGGGGAGAATAGAGTTGCTGAACGAAAATATCTCTATGG
GATCTGACTTATATTGAGACTCCCCCTAAAACCCTTGGGGAACCCCCCAAAAGGGGGGAN
NNNNNNNNNTNNNNNNNNNNNNNNTTTNTNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNT
NTNNNNNNNNGNNNNNNNNNNNNNTNTNNNTTNNTNNNTNTNNNNTNNTTNNTTTTTTTT
TNNTTTTTTTTTTNNTTCCCCTTTTTTNTTTTTNTTTTNTTTTNTTTTTTTCCCTTTTTT
NTTTNNNNTTTTTNTTTNNTTTTTTNNNNTTTTTTTNNNTTTTTTTAATNNNNNNTTAAA
TTTNTTTTTNTTTNNNNTTTTTNNTTNTTNTTTTTTNNNNTTTTTTTNTTTNNNTTTTTT
TTTTTNTNTTTTTTTNNNNNTTTTTTTTNNTTAATATNNTTNNTNNTTTNTTTTNNNTTT
NNNNNNTNNTTTTNNTTAATNTTTNNNAATTNNNTTTNTNNTTNTTTTNTTTAAANNNTA
AAAAAATAAAAAAAANATTTTTTAATTAATAATNNNTAAAAAANATTNTATATATAATAA
AAAAAANNNNNAATACANATTTTTAATATTACCNTAAAATATATTTATATATTAAT
GenBank Accession AL951352 [GenBank]
Graphic View Graphic view of sequence AL951352 of line 335F03
Predicted Position of Insertion Chr4:351568 - go to primer design
BLAST e Value 2e-76
Hit Clone Code (BAC ID) T18A10
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At2g39840

 
Sequence (A. th genome BLAST matches underlined) 
>22-K016067-022-335-F03-8409
TGATCTGTAGATTTCCCGGACATGAAGCCTATTGATGAGGTATTACCCTTTACTACATGC
GTGAAGCCGATTCGGATCTGGACACGTGGAGTACCGATATGGGCTGACAATGTGATCATG
ACACGCCATCCTGTTTCGCTCTATAACGGAAGAACTATAAGACTCAAATTTAACCCTAAT
CTCTCTCGCCACAAAATTATCTAAACCCGACCTTTTTCTTGCTAGAATTCCCCGGATTTA
GATGGGAGCCTCAAGCTCCCGTAAATTGGGTTGCTGAAGGAAAATATCTCTAAGGGATCC
CCCCTTTTGTGTGACCCCCCCACCAAAAATTTTTTCTCCCCCTGGGGTCCCTCCCAAAGG
GGAGGGTAGATCTAGTATTGGTTAAGTCCCTTTTTATTTGAAGGTTTTCTTACCTATGGG
ATCCTCCCTATAGTGAG
GenBank Accession CR770346 [GenBank]
Graphic View Graphic view of gene At2g39840
Predicted Position of Insertion Chr2:16627818 - go to primer design
BLAST e Value 3e-17
Hit Clone Code (BAC ID) T5I7
Hit Gene Code At2g39840 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation type one serine/threonine protein phosphatase 4
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37