SimpleSearch - Line and FST details
Line specific information
| Line ID | 336B09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N432181) |
| Segregation Analysis | 50:42:31 |
| Confirmed for Hit | At2g21540 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 5954, 5981, 5995, 6015, 6032, 6039, 7722, 10483, 10513, 10525, 11023, 69774, 69778, 69785, 69786, 69788 |
Gene hit At2g21540
| Sequence (A. th genome BLAST matches underlined) | >66-K016157-022-336-B09-8409 TGTCCTGTAATTTCCCGGACTGAAGCCTTTACATTGAATATATCCTGACGAAGAGAACTC GAAGGAACAGCCGAGCCATGTCTGTCTCTATAGTTGACGATATTGATCTTGAAGAGCTTC AAGCTGTTGACGCTTTCCGTCAAGCTCTTATCCTAGGATGTCGATCGGTGTCAACCTAGG AGCCGGCCAAATTGTCAGGGACTACCGTGCATCGCGGGTGACGCATGGCGAATCATTCGA ATATGTCGGCTCGCACAAAGTCCCGCATATAATATATGGCCCCGCTCGGCGACCCGCANA GATAGTGTGCAGAATCGCTGCCATGACGCTATGGGATCATCCAACTCGCTAGAGGACTAT TCTTCTTCTAACAGTGTGGTCTTGGGAGCGGCCGCACCNAAAGACGAATCACAATTGGAA GGCTCGCTCAATGATCTATCGGAGCTCGGGGTGCTTCGCAAAATTCTCATTACTGATGGA ACAACAGGATCTATGCATTGATCACAAGATCGTACAATTGGCTATGGGATCCTCCCNCAA AAGGAGACTCTGTATCAACGGTTCCCCCAGGGGTTAACGGCGAGGTCCCGTTAGGTCCTC GATTTGAAGTCTTTGACTCCTAGGGGAATGGGGGATCCTCTA |
| GenBank Accession | AL951419 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:9223514 - go to primer design |
| BLAST e Value | 3e-48 |
| Hit Clone Code (BAC ID) | F3K23 |
| Hit Gene Code | At2g21540 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | SEC14-like 3 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit YUP8H12
| Sequence (A. th genome BLAST matches underlined) | >66-K016135-022-336-B09-8409 TATCCTGTAATTTCCCGGACATGAAGCCATTTACAATTGAATATATCCTGACGAAGAGAA CTCGAAGGAACAGCCGAGTCATGTCTGTCTCTATTGTTGACGATATTGATCTTGAAGAGC TTCAAGCTGTTGACGCTTTCCGTCAAGCTCTTATCCTATGGGATCTCCCCTATAGTGAGA TAGGAATGACTTTTCCATCTACATTTCTTTTGAATTTTGGGAACAGCATTTGACAAAACA TGAGCACTAATGATGCTAAACAAATCTTTTAATATCATATCTAAATCAATCATCACCCTT AAAACATAGTCTGAGATAGAACTTTGGTAACGCATTATGCTAATGACACACACTATGGGA TCCTCCCTATAGTGAG |
| GenBank Accession | AL951418 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:1497679 - go to primer design |
| BLAST e Value | 1e-68 |
| Hit Clone Code (BAC ID) | YUP8H12 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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