SimpleSearch - Line and FST details


Line specific information

 
Line ID 336E01
Vector Used pAC161
Line Availability available as T3 set from NASC (N432209)
Segregation Analysis 50:40:40
Confirmed for Hit At4g29800 At3g48420
Parent of DUPLO pair none
Parent of pair(s) 1670, 95682

Gene hit At4g29800

 
Sequence (A. th genome BLAST matches underlined) 
>05-K016135-022-336-E01-8409
TTGCGCACTTCAAATCACCCACACTGGGTAGCTATCCAGCTTGTTCTTGAGCATTATCCA
CCAACTGTTAGAGCGTCTCCAACCGTAACGCTAAAGCAAGCTGTGTCCAAAACTAACCGC
AATGCTATAAACGCAACTCTCACTCTCATATCTAAAGATAGATGAAAACACCTGTTTTTG
GTGCTTCCTATTGGTTTTTCATACCTTTTGTTTCGACGTTGATATTTACTTGATAGGGAG
AATTAGAGTGCGATTCAAATATACAACTCATTATTTTAGTTTCATATTTCATAATGTCCT
TTCAAAATTCATTTTGATATCTTAACTCCCAGTTATTCCATTCATAACACTATATGTTAG
CAAATCCCAAAGGCGGGATTGATGATGACTTGTAACCCTAAAAATGTCAGAGTGAAACCT
GTTTCTTGCACTAAAAGCTGAATTCTTTTCTTTTTACATTTTGAAGG
GenBank Accession AL951466 [GenBank]
Graphic View Graphic view of gene At4g29800
Predicted Position of Insertion Chr4:14591196 - go to primer design
BLAST e Value 8e-175
Hit Clone Code (BAC ID) F27B13
Hit Gene Code At4g29800 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation PATATIN-like protein 8
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At3g48420

 
Sequence (A. th genome BLAST matches underlined) 
>03-K106829-0022-336-E01C-3144
CCTTGCAGACCCTTCCTCTATATAGGAAGTTCATTTCATTTGGAGAGGACAGGGTACCCG
GGGATCAGATTGTCGTTTCCCGCCTTCGGTTCAAACCACATTAAGAAAATTGTTTCTATA
TCAACATTGTTGTGTATAGTCATTTGAACAGAACATTCATGTAAAACCATATATATAATA
TAATTCGATTATAACATTATGAAGAAAAGCGTTACAATATATTGGGCTTGTGAGCGTTGT
TGGGTTTACTATGTAAATGGTTTTGCTTGACCATTGTTGCAAATTTCTATGTGAACTTCG
AATATACAACAAACGCCGAAACACAAAGCTTCGAATATACAACAAACGACGGGACAACGT
AAAGTTCGTACCTTTTTCAAGTTGGTATCTGAATTTTGGTGAATTGAGTTTTATCTCCAT
AAAGCTACGAAATTGC
GenBank Accession HG968903 [GenBank]
Graphic View Graphic view of gene At3g48420
Predicted Position of Insertion Chr3:17931558 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T29H11
Hit Gene Code At3g48420 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Insertion Classification TS2TE (3')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL951467 [GenBank]


Last Updated on 10.06.2021 13:37