SimpleSearch - Line and FST details


Line specific information

 
Line ID 337E11
Vector Used pAC161
Line Availability available as T3 set from NASC (N432315)
Segregation Analysis 50:41:27
Confirmed for Hit At4g30980
Parent of DUPLO pair 12109
Parent of pair(s) none

Gene hit At4g38490

 
Sequence (A. th genome BLAST matches underlined) 
>85-K016158-022-337-E11-8409
TTTCCGGACTGAAGCCACTCTATGTATTTCTGCCATGAAAGACAAGAGAGATCTCGTGCT
CCTTCTCACAAGAAAAATGCAATTCAATATAATGCAACATTCAGACTCTTCCAGCAGATA
TATATATTAAAAGCTATGGGATCCTCCCTATAGTGAGAAAAAATCGCCTTTTTTCTCTTT
TATATCAGTCACTTACATGTGTGACCGGTTCCCAATGTACGGCTTTGGGTTCCCAATGTA
CGGGTTCCGGTTCCCAATGTACGGCTTTGGGTTCCCAATGTACGTGCTATCCACAGGAAA
GAGACCTTTTCGACCTTTTTCCCCTGCTATGGGATCCTCCCTATAGTGAG
GenBank Accession AL951630 [GenBank]
Graphic View Graphic view of gene At4g38490
Predicted Position of Insertion Chr4:18006946 - go to primer design
BLAST e Value 2e-52
Hit Clone Code (BAC ID) F22I13
Hit Gene Code At4g38490 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation transmembrane protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At4g30980

 
Sequence (A. th genome BLAST matches underlined) 
>85-K016136-022-337-E11-8409
TGATATGCATGTCCTATCGGATCCTACCTATAGTGAGAGAAACATGTANATTTCCCGGCC
ACCGTTATAGACGCTCCCTCCGTTTCCGAGCCGTGATAACAGCCATTTGTCCATTTCATT
TTCCCTTTTTTGGGTGGGAAAGAGAGACATAAATTTACCAAACAAAGACAAGTGTGATAG
GTGGTTTTGGCCAAAGTTTAAAAACCATATCGACTGTTATCCGATACCAAACCCGNAGTN
GCGGACACTTTGGTTTTCTGTCTTTAACACCTACCAACAACGCTCCACCATTAT
GenBank Accession AL951629 [GenBank]
Graphic View Graphic view of gene At4g30980
Predicted Position of Insertion Chr4:15079561 - go to primer design
BLAST e Value 1e-47
Hit Clone Code (BAC ID) F6I18
Hit Gene Code At4g30980 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation LJRHL1-like 2
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37