SimpleSearch - Line and FST details
Line specific information
| Line ID | 339A06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N432454) |
| Segregation Analysis | 50:48:22 |
| Confirmed for Hit | At5g60000 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 11694 |
Gene hit At5g60000
| Sequence (A. th genome BLAST matches underlined) | >41-K016138-022-339-A06-8409 TTTCCCGGACTGACTATGTGTATCCTCCCTATTAATGAGATCTACAATTGTAACTATATA CTCATTTACACTCTTTTTCACGAGGGGATGTTCCTGTCTTCGTCACGTGCCACCGAACCC CTTGGCTCTCCAAACTCGTCACCTTTAGGTCATAAGTTGCTGATAGAGATCCCAACCACT ACCGGCGACTATGCTGTTGATGACAAGGCGCAAGGATCTATGCTTGCCCACCTCCGTGGT TCTTCATGCTTAGGATCTTGGATCCACGAGCCTTGCATGGGAAATTATCACGATCGCCAT TGGCGTTAACAACACTAGCACCCACGCGTCTGGACAACTGCGAAGCGCAATCAACATCTC TGAAACCCACACTACCTATCGCAATCGTCGCCGTCAGAAACCGAGGGCTATATCATGCCT ATGGGATCCTCCCTATAGTGAGACATTTTAGCTTATTTTGAACACCTATGGGATCCTCCC TATAGCGAGACGTATT |
| GenBank Accession | AL951843 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:24159710 - go to primer design |
| BLAST e Value | 7e-58 |
| Hit Clone Code (BAC ID) | MMN10 |
| Hit Gene Code | At5g60000 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | transmembrane protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At2g07981
| Sequence (A. th genome BLAST matches underlined) | >41-K016160-022-339-A06-8409 TTTCCCGGACTGACTACATTTACATTGATATATCCTGTCTACAATTGTAAATATATACTC ATTTACACTCTTTTTCACGTGGTGATGTTCCTGTCTTCGTCACGTGCCACCGAACCCCTT GGCTCTCCAAACTCGTACCTTTAGGTCAGAAGTTGCTGATAGAGATCCCAACCACTACCG GCGACAATGCTGTTGATGAGAAGGCGCAAGGATCTATGGGATCCTCGCTATAGTGAGAGT TTTGACTTTACAAAGAAAAGTACTAATCAATAGTTAAACTTGGATGGGTCCAGCTCATGC TATGGGATCCTCCCNTATAGTGAGAGACTCATATGGACTTTGGCTACACCATGATAGCTT TGAGAAGCAAGAAGAAAGCTGGTTAGTGTTTTGGAGTCAAATATGACTTTATGTCATGTG TATGATTGAGTATAAGAACTAAAACCGCATCCCGATCTTATAAGCCTAAGTAGGGTTTCC TTGTTACAACATACAAAGCCAAAGACTCATACGGACTTTGGCTACACCATGAAAGCTTTG AGAAGCTATGGGATCCT |
| GenBank Accession | AL951844 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr2:3614703 - go to primer design |
| BLAST e Value | 1e-93 |
| Hit Clone Code (BAC ID) | T6C20 |
| Hit Gene Code | At2g07981 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein |
| Insertion Classification | 5' region |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
