SimpleSearch - Line and FST details


Line specific information

 
Line ID 339E12
Vector Used pAC161
Line Availability available as T3 set from NASC (N432508)
Segregation Analysis 50:39:34
Confirmed for Hit At4g18780
Parent of DUPLO pair none
Parent of pair(s) 5449, 5458, 5591, 5670, 10393, 96715, 96719, 96723, 96724

Gene hit At4g18780

 
Sequence (A. th genome BLAST matches underlined) 
>93-K016138-022-339-E12-8409
GTAGTGTTGTTCCCGGGCCAAGATGTTCCATCTTGCATTGTCCATCCTTCTTCTGGTGTC
TTTTGAGCCTTGGCGACTAAAGCATTCATTCTTATTTTAAACTCTTCATAATCTCTCTAC
AAGAAGAGAAATTAGACATTAAGTTTTCGATTCAATCATCGGTTAACGCTATATGAGATT
AATTTAAGGTTTTAAAGCCCTTGCTTACTTACTTTCATGGCTCTACGTTCTTTCACAAAA
GAAGGTTGAACTTTATCCCTCAAGTAATCGATTTTAAGCGAGAAGTAAAACTCGGGAGCT
CGTGGCTCGATGGAGTACTTTTTGCAGAAAGGTACCCATTTCCTATGGGATCCTCCCTTA
TAGTGAG
GenBank Accession AL951915 [GenBank]
Graphic View Graphic view of gene At4g18780
Predicted Position of Insertion Chr4:10314972 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F28A21
Hit Gene Code At4g18780 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation cellulose synthase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At4g22930

 
Sequence (A. th genome BLAST matches underlined) 
>93-K016160-022-339-E12-8409
TGTCCTGAAATTTCCCGGACATGAGCCATTTACAATTGATATATCTTGGCCCGGGAACAT
CGTGACCGTCCCGGGATGATTCAGGTTTGCTATGGGATCCTCCCTAGTAGTGAGAAAGGG
CTGAAATTTGTGATCAGGTCCAGGTCCATTAAAAATATCGGGCTAAAATTGGGCTGGCCT
GTTACAGAGCTTTTATTTTTTTCTTCTTCTTTTACGTTAAGCGACGTCGTATCTTGTAAA
CAACAAAACACGAGTACTGTTTTTTCTTCTTCTTTCTCCTTCAATCTCTTCCTCAAATCA
CTCTTTTTGGGGTTCGTTTTGTTTGTGTTGTAAGCATCCCTGTTGTGCATTTCGTTTATC
CAGGATCGTATTGCTTACCTAAACAAGTTCAAGTTTTCGATTTTGGTTTCTATGGGATCC
TCGCTATAGTGA
GenBank Accession AL951916 [GenBank]
Graphic View Graphic view of gene At4g22930
Predicted Position of Insertion Chr4:12018666 - go to primer design
BLAST e Value 8e-64
Hit Clone Code (BAC ID) F7H19
Hit Gene Code At4g22930 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation pyrimidin 4
Insertion Classification Promoter
Confirmation Status unknown


Last Updated on 10.06.2021 13:37