SimpleSearch - Line and FST details
Line specific information
| Line ID | 339G08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N432528) |
| Segregation Analysis | 100:97:71 |
| Confirmed for Hit | T20D1 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At1g10930
| Sequence (A. th genome BLAST matches underlined) | >63-K016138-022-339-G08-8409 TATCCTGAAATTTCCCGGACATGAAGCCTTTACATTGAATATATCCTGATATATGTTGAC AGGTCCGACATTCTTGGTTAACAAAAAAAATATGTTACTAGGGCTGTGAAATTTTGGGTG GCAAAATCCAAACCTTTTAGAACTTGGGTTCTCCTTATGGGTGGGTACTGTCCAAGGGGA AAGAGGAGGATGGCACCAATATAATTTACAAATAAGTGCTAAACAAAACGCACACCTCTC ACCAAAAAGATCCTCGGAACTGCCCCAATTTTGGTTTAATCCACAAGCTACGAGAAAATA AAAACTACTTTGAGATATATTGTTTACTGAAACAAATTTTGAAAGAAAGGGAACCTCCCN TTGAAGATCGTGCTTATGACCGCAATTGAAAACTATAGTTACCACCACAATATCCCTTCA GATATATTACCTTGTGAAATTTGCGGGTGCGCCCAAGTATGCACATTCACACTGGGAAAC GCAATTGACCTATGGGATCCTCCCTAATAGCGAGACCATGNTGACGAAGATTTTCTTCTT GTCATTGAGTCGTAAGAGACTCTGTATGAACTGTTCCGCCAGTCTTTACGGCGAGTTCTG TTAGGCCGTCTATTTGAATCTTTGACTCCATGGGAATTGGGGATCCTCTAGTATCGGCAT GGGATCCTCTTCCAACCGACAATGGTGTAAATATAAGGTTGTAAGGGGAAAAGGAAAGTG CTGTT |
| GenBank Accession | FR808197 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:3653831 - go to primer design |
| BLAST e Value | 4e-47 |
| Hit Clone Code (BAC ID) | T19D16 |
| Hit Gene Code | At1g10930 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | DNA helicase (RECQl4A) |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit T20D1
| Sequence (A. th genome BLAST matches underlined) | >63-K016160-022-339-G08-8409 TATCCTGAAATTTCCCGGACATGAAGCCATTTACATTGAATATATGAATTTCTTTGTGCT CCATAACTACTAAAACAAATGAAGAATCAACTATGTAACTAAAAGGTAAAAACCAGTTTG ACGAAATTAAAACAATAATGTAATTAGGTTCTCCTTATGTTTGGTTACGATACCAAGTGG ACTGTGTAGGATGGTGCAAATATGAAATACAAATCACTGCAAAACAACACGCGCAGTCTC AGTTTTTAGATCATGGCCCTGCCAGAATTTTGGTGGAATCCACAGCTATGGGATCCTCCC CTTATAGTGAGANNTTNNNNNTNTNGNNNCTCCNNCNTTTTTCNGACCCTCCTCCCCTTT CCNCTATCTACNCANTCCCCNCCCCCNTNNCTCTCCNNTGGAATCCAAAGATGTTTCCCC ATATTACCCTTTGTTGAAAATGCTCAATTGTCCTCTGTGACTTCTGAGACTGAATCTCTG ATATTCTTGCAGTAGACAAACGTGTCGCGCTCCACCAGTGGGACTAACATTTTCTAATGG CCATGGGACCCGAAGACATACTGGTTGAACTGTTCTCCAGTCTTTACTGCCAGGTCTGAT AGGACCTCTATTGGAATCTTTCACTCCATGGCAATTGGGGATCCTCTA |
| GenBank Accession | AL951944 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:6591855 - go to primer design |
| BLAST e Value | 4e-130 |
| Hit Clone Code (BAC ID) | T20D1 |
| Insertion Classification | Genome Hit |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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