SimpleSearch - Line and FST details
Line specific information
Line ID | 339H05 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N432537) |
Segregation Analysis | 18:10:3 |
Confirmed for Hit | At4g12020 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At4g12020
Sequence (A. th genome BLAST matches underlined) | >40-K016138-022-339-H05-8409 AGATCCTGATACGCTGAAGCCGACTTCTCAAGAAGCTTGTTTTAATGTCAGATATCCGGA TAACATGAGGTTCTACCTCTAAAACTTCAGACAGAAAATTCTCTCTCACAGCATCGTGAC CTTTTACCTCAACTTCTTTGTGGAGGTCCTTAAGGACGACACAGGTCTCATATTGGACAG AGATTTTGCGAAAGATCTCTTCAGCAATGGTTGTTTTTCCTATACCAACTGTACCCCATA TACCAATGCTGCGAACATCAAGGGACTCAATGCATAGCAGTGACAAAATCTCCTCTACTT GCATATCCATCCCAATCATGTTCACCTTATCAGCAGAACATAGCACCTTTAAAGCATCTC TTACAATCTCATCTATAAGTTCAGATTCAGACCTGCGAGATTTTAAGAATAAAGTAGACA ATACAAACATCAGACGAAAGAGAGGATAGTATAATAAACTTCTAATCTTCTATAGCCTTA CTTTGCCAAATAAAAATTTATTCAATTCTCTAAAACCAAAGACTTTCTACATTTAGAACC CAGGGATCACGTACTTATCTGTCAATGTGTAGCCAGGCATCTGAGTTATTTCCTTCNAAG CAGCTTGCCATTTTTTTGGCTCATCTTGGAGATAAATCTCTCATAATTCTTGCTGTTACA GACAAAATCATATGGTGATAGTCTGTAGAAAATTGGATAACCACTCGATCCTCTGTATGT TGGTGTTCAAGAATGGTTTAGAGGTTCGAAGGGAATATGGGCTTGTTATACTATAATCAA AACC |
GenBank Accession | CR356306 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr4:7205319 - go to primer design |
BLAST e Value | 0.0 |
Hit Clone Code (BAC ID) | F16J13 |
Hit Gene Code | At4g12020 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | protein kinase family protein |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Gene hit At5g16230
Sequence (A. th genome BLAST matches underlined) | >40-K016160-022-339-H05-8409 TGATCTGTAATTTCCCGGACATGAAGCCATTTACATTGAATATATCCGGTCATGAACACG TTGCTGGTATCCTCGCTATCTTAAGCATATAGATTATTTAAATCTATTTCGCTCGCAGTT ACTTTAAAAGTTTTTTACTGGCTATTAGTTTAACGATTTATGTCATTTTTTTATTTGCAA GATTTTGTTGATTCACGAGTCTTAATGTTTATTAACATGATGAGCATTCATTAGTGCTAT GTCCAATGAGACTATAATACTACTTTCTTAAAGACATTGGATTCCATGTATCTTCGTTAA TCCCATTATTCATATTCGTATCATGATATAAACTTTTTTTTTGGTCCACCTGAAAACTTT TCTATATTGCAGAATCACTACACTTTTTTTATGTACACTTTATGAGTGTGTATGCATAAG TTGGTGATTGGTTTCACACGGATCATGACATTAGCTATGGGATC |
GenBank Accession | AL951956 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:5303669 - go to primer design |
BLAST e Value | 1e-170 |
Hit Clone Code (BAC ID) | T21H19 |
Hit Gene Code | At5g16230 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Plant stearoyl-acyl-carrier-protein desaturase family protein |
Insertion Classification | CDSi |
Confirmation Status | unknown |
Last Updated on 10.06.2021 13:37 |