SimpleSearch - Line and FST details
Line specific information
| Line ID | 339H06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N432538) |
| Segregation Analysis | 80:76:66 |
| Confirmed for Hit | At3g53520 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At3g53520
| Sequence (A. th genome BLAST matches underlined) | >48-K016138-022-339-H06-8409 TTGCCTACATGTTTTATACTCATTTGCTTATATTAGCTACTGTTTTTGACTTGGGATTTT GTCATTGGGCCATTCACACTATGGGATCCTCCNTATAGTGAGAAAAAGATCCCTAGGATC GTCTGGGTCGATTATGGTATCCTCCCGATAGAGAGACCTTTATCTTAAACTTCGTTTAAG ATTCGGTTACGGAAGTCACTAACCATGCGAGGCAGTTCCTCCCTCATAGAATCTTTGGTT CCCAGTTCAACTGTTCCTTTGCTATGCTTATGTCTGGTTTCCTCTTGTGAAGATCGTCTG CTGCGTTTGGTTCGAACTCTATGGTCGCGCTTGGGTCGATCACCTTCTTTTCTTCTGCAC ACAAAGTTCCCATTTCATACACGGAATTGGCGTTTCTTTATGAGACATCTTAAACATTGA TGCACATTTCTAGCGATGTACATAACCACCATATCGAACTGAATTTCCTTCAACTAAAAC CGACCCAAACTTTCTTTAGATGAAAAGATCAAAAACGCTTCTGAAGTTTGGAAAGACTCT TCCCCCAAGCTACACCCAACCGAGAACCTGAATGCACCAGGCCCCTACGTTTACCACTCT GGGTTTCCTATCTCTTTTTTGCCCGAACATAAACGAAGAATGGATACAAATAAAGCAAAC CTTCTGTAAATCCCCACCATTGCGGAATTCTCCCGGGCTCACCAAGGTGTAACGGTCCCT TTATTATTCTCCTTCCAATAAAACGTACCGCTCCCTCCCCATATGGAGATCCCCCTAATA ACGAGGCGATAGACCCTATGGCGCACCTTATACAAAATCCCTACCGTGTGGCCCTTTGTC TCAAACAATCGATCTATATCCATGCCCCCTCTTATTTTCTTCTTTTCCC |
| GenBank Accession | AL951957 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:19844158 - go to primer design |
| BLAST e Value | 2e-141 |
| Hit Clone Code (BAC ID) | F4P12 |
| Hit Gene Code | At3g53520 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | UDP-glucuronic acid decarboxylase 1 |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g16230
| Sequence (A. th genome BLAST matches underlined) | >48-K016160-022-339-H06-8409 TATCCTGTAGATTTCCCGGACATGAAGCCATTTACATGTCATTTATATATCTCCTCGCGA TAATGTCGTTGTGATCCTCCACCTATACAGCGGAAAGCCTGACGACGGATCTGCATTCTC AAAAAGATCCCTTGAGACTCGTCTGGGGCGGTTATAGGGATCCTACCTATAGTGAGATTC TATTTGCAAGATTATAGTCGATTCTCGAGTCTTAATAGCTATTAACATGATGAGCATTCA TTATCGCTATGTCCAATGACACTATAATACTACTTTCTTATAGACATTGGATGCCATGTA TCTTCGCTAATCCCATTATTCATATACGTATCATGATATAAACTTTTTTTTTGGTCCACC TGAAAACTTTTCTATATTGCAGAATCACTACACTTTTTTTATGTACACTTTATGAGTGTG TATGCATAAGTTGGTGATTGGTTTCACACGGATCATGACATTAGCTATGGGAT |
| GenBank Accession | AL951958 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:5303660 - go to primer design |
| BLAST e Value | 1e-96 |
| Hit Clone Code (BAC ID) | T21H19 |
| Hit Gene Code | At5g16230 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Plant stearoyl-acyl-carrier-protein desaturase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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