SimpleSearch - Line and FST details


Line specific information

 
Line ID 340F02
Vector Used pAC161
Line Availability available as T3 set from NASC (N432606)
Segregation Analysis 50:49:45
Confirmed for Hit At5g56060
Parent of DUPLO pair 12272
Parent of pair(s) none

Gene hit At4g16670

 
Sequence (A. th genome BLAST matches underlined) 
>14-K016152-022-340-F02-8409
TGAAGCATGTGCACATAAGACACAGACCCATTTACAGGTGGGGGATTGAGACTCTATGGG
ATCCTTCGTATAGTGAGACCAGAAAACGACCTCTTGCCCGAATAAAAGGACGATTACGTA
AGGCTGCTGCGCACTCTGTTAAAACAGAACTAACCCAACTCACGCTGATGTGATGGACCC
TCTCGTCGAGCATGAGAACCACCACCTGACTCCCGAATGTGGAGAATGATCTACGCTTCT
AGCGAAGCTACCTACGCCACTACCTGAGGATATGGACTGAACGTAACCACCGAGTACCTT
TGTGGACCCAGACGACTCCAACCCTTCCACATCTGCTTATCCTCACTGTACTGAATCCCG
AGAAACAACTCAACCAAAACACTGATATTTCACAGATGCCCGATCCCTCTTCACTGGTTC
CGATAGCACCACCACCGACGCTACGAGAAAGCCGGCTCTTGTATCTATCTTCTGTTAAAA
GTATATTAAGTTCCGATGGCTGAGACGATCGTACGCTACCGTCAAATAAGGGAAATTAAT
GenBank Accession AL952050 [GenBank]
Graphic View Graphic view of gene At4g16670
Predicted Position of Insertion Chr4:9385268 - go to primer design
BLAST e Value 1e-19
Hit Clone Code (BAC ID) FCAALL
Hit Gene Code At4g16670 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation auxin canalization protein (DUF828)
Insertion Classification TS2TE (5')
Confirmation Status unknown

Gene hit At5g56060

 
Sequence (A. th genome BLAST matches underlined) 
>14-K016161-022-340-F02-8409
GATCATGTAGATTTCCCGGACATGAAGCCATTTACAATTGAATATGATGTACATCTTCAT
CTTTCGGCATCTTTCTTGCACTCTCCAGAAATCCTCTGACGAGTCCTTGGTGTAACCTGT
AAATTGTACACGAAAACGCATATGTTGAAAATCAACAAGAATAAACAAAAAGAGAAGAAA
TACAAAAGAAACTTACATAATGAAGAAGATGTCGTGCTCTGAACCAAAACCTAATCCTGA
ATGGGGAAAATTAAAGATGATTCTATCGTATCGACCTAAGCGATAGTCTGAGGACATGGA
GTGGACGTTAACACCGTGGACCACTGTGCACCCAAACAACTCCAACCCTTCCACATTTGC
TTTTCCATCAGTGTACTTAATCCCTATGG
GenBank Accession AL952051 [GenBank]
Graphic View Graphic view of gene At5g56060
Predicted Position of Insertion Chr5:22704634 - go to primer design
BLAST e Value 2e-95
Hit Clone Code (BAC ID) MDA7
Hit Gene Code At5g56060 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ATP-binding protein, putative (DUF2431)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37