SimpleSearch - Line and FST details


Line specific information

 
Line ID 341B12
Vector Used pAC161
Line Availability available as T3 set from NASC (N432664)
Segregation Analysis 50:49:38
Confirmed for Hit At1g45191
Parent of DUPLO pair none
Parent of pair(s) 69868, 70230, 70359, 70385, 70393, 70398, 70403, 70407

Gene hit At4g38120

 
Sequence (A. th genome BLAST matches underlined) 
>90-K016162-022-341-B12-8409
ATGAGCATTTACATGAGTACATATTTTGTTTTTATAATATCGGGAGACTATGGGATACTC
CCTATAGTGAGAGCAAGAACTAAATCTCACGCTAAGGAATTTTGTCCATGGAAGTATCTT
AAAGGATCTTTACCTAAGGGGTCCCCCCTAGATACAGAACCTCGCGATAAAGGATTTTGG
CCTTGACATTATCATGAACGATCTTCACCTATGTGATCCTCCCTATCGTGAGAGCTATGA
AGCTTAAGACCTGCAATCTTTGAGTAGTCTGCTCAAACAAAGGAGAATTTCCTGGTATGT
ATGATAATCTTGAACATCTCTCATCCAAAGCTGGGATTGGGCCTGGAGCGCATCTGGTAT
CCACTTACGTCATCGGAAACAGGACATTTGATATCTGTA
GenBank Accession FR808222 [GenBank]
Graphic View Graphic view of gene At4g38120
Predicted Position of Insertion Chr4:17894561 - go to primer design
BLAST e Value 6e-06
Hit Clone Code (BAC ID) F20D10
Hit Gene Code At4g38120 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ARM repeat superfamily protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At1g45191

 
Sequence (A. th genome BLAST matches underlined) 
>90-K016153-022-341-B12-8409
TGATCTGANATTTCCNGGACATGAAGCCATTTACTGAGTACATATTTTGTTTTTAATAAT
ANTGGGAGGCTATGGGATCTTCCCTATAGTAGAGAAAAATGGCTTACTGCCGAATATATA
TAATCAAAAAAATGAAATACATTAAAGTTTTGTATGAAGACTTGGAAACATCACTTAAAA
TACAAAGTAAAAAAAAAAAAAATTCTTGCCCCCCCCCTTAAAGGGAAACGGAAAAATAAA
ATGTTTGTCCTTGGCCGGAAAAAGGGAAAAGGGAAACTTACCTGGGGAGGGAAATCCCAA
ATAAAAGGGCCTTTCCCGGCCAAAACGGGTTATATAAATTTTCCCCAAAAAAAATGGGCT
AGGGCCTTGTTTCCAAGGGGTTTCCCCCCCCCATGCGGAAAAATGGGCCCCTCTGGGGCA
AAACGGGTTTACATACTTCCAAATCCCCCCTCCCTGGGCCTAGGGGA
GenBank Accession CR770349 [GenBank]
Graphic View Graphic view of gene At1g45191
Predicted Position of Insertion Chr1:17116613 - go to primer design
BLAST e Value 3e-26
Hit Clone Code (BAC ID) T2P3
Hit Gene Code At1g45191 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Glycosyl hydrolase superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37