SimpleSearch - Line and FST details
Line specific information
| Line ID | 341D03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N432679) |
| Segregation Analysis | 50:23:16 |
| Confirmed for Hit | At5g61350 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 5117, 7473, 10201 |
| Note |
Gene hit At1g77950
| Sequence (A. th genome BLAST matches underlined) | >20-K016153-022-341-D03-8409 TTTCCCGGACATGAAGCATATTCGGGTATGACATGAGTCTGAGCCATTTCAGCATTTTTT TTTTTCGGGGGGGACAGTTTTTGTTAAGGACTTTGGAAAAACTCAAAATTGAGGATGACT GGGTTCTCCAAATCAACGAACCTCGGTTTATTCCTCATTAATCCTTATAATAAATTGGTT TCATCTTGTTTATAGGTTTTAAAAAACAAAATCGGCTATGGGATCCTCCCTATAGGGAGA GGGCGGATCTATGGGATCCTCCCTATATTGAGAGAAAAAAAAGGGCAAGGTCCCCTCCTT TTTCGAAGAAGACGGGTTAAGGTCCGCCCCCTTATGATAAGAACCCCNACCTTTTTGTAC CAAGACCGCCCCCTAGGGGGGCGTACACCCGTTAGCCACGAAATCAGCGTGCTACCCTGC AAATAAAGCGCTGGCCCGCGAGGAGAGGCCAAGTGCAGACATTGCCGAAAGCTGGTCGAT GAA |
| GenBank Accession | FR808228 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:29308746 - go to primer design |
| BLAST e Value | 3e-57 |
| Hit Clone Code (BAC ID) | F28K19 |
| Hit Gene Code | At1g77950 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | AGAMOUS-like 67 |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 340D03 |
Gene hit At5g61350
| Sequence (A. th genome BLAST matches underlined) | >20-K016162-022-341-D03-8409 ATTGAATAATTTGTTTTTTGGACTCGAGTGACTTGCGTGTAAAGGAAGCAACCATGACGA GAAACTATTCTGTTTTTGCCAGTCTTTAGGACGTCTCTGCCATCTAACAAGCAACACGAC AACCCCTAAGAAAGCGGTTAGCGCCATCACAAACCCAATACCCGCAATAGCAAGCTTCTT AGATGACATACCACCGATCGGGGCTTTGAATTACCTATCAGCTCCCATGAGTCCATCTAA ACTCCCAGTAGCATTGTTCTACTCCATGAGCTCTTCACCGTAAAGTATCGCATTCGGTTT ACCCGACTGAAGATTCGGAGTCGGACCAACCTGAACCAAGATCGAACCATTGGTGATCGT AGACGCATTAAGCACGAAATCCGCGTAATACGCTGTACCTAAAGCGCTGGTTAGTGAGGA GAGGTCAAGTGCAGAGATTGCAGAGAGCTTGTTGATGAAAACATTGAAGATAAGGTCGTT AAGCGATTTGCTTACAATGTCACAAAAATGTAACCTAATGAAGTAATCATGACCAAAATC AACACTCATTCTCCATGAGAGATTGAAATTAGGTTGCGAGGTTTGTGCATCGGCCATTTC CTCCGCGGTGGCGTAAACCGGATTAGGAGCGATCAACGCCGTAGCTCCACCGTCTGGATA ATAATCGCACTATGG |
| GenBank Accession | AL952153 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:24669394 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | MFB13 |
| Hit Gene Code | At5g61350 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Protein kinase superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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