SimpleSearch - Line and FST details


Line specific information

 
Line ID 342B12
Vector Used pAC161
Line Availability available as T3 set from NASC (N432760)
Segregation Analysis 100:100:80
Confirmed for Hit At2g43330
Parent of DUPLO pair none
Parent of pair(s) 2058, 93638

Gene hit At4g19880

 
Sequence (A. th genome BLAST matches underlined) 
>90-K016163-022-342-B12-8409
TATCATGTAGATTTCCCGGACATGAAGCCATTTACAATTGAATATTTAGTCACTCAATTA
CCCTCAATTACAAAGATTAATTACATAAGTGCCACTACCACAAAATCTTGCAAGGTTTAT
CAAACACTTGTTCCGAATGATTCATCTTCTTCTTCTTCTTCTTCTCCGATCTCATGTTAT
TGGGGGATTTCGTCCTATGGGATCCTCCCCTATAGTGAGATTATTCATGGCTTCCACACT
TACCTCCTCATAAGGGCCTTGTTTCTTTGCAAACCCGCATCTATAGACACCATTATTTAT
CCCATTGTAAATCCATTCATTAGTTTCATCGATTTTAGCTTGGAGATGGGAAGGGTAAAG
ATCAAGATCAGGATTTCCCGCAATATGATTGAACTCAGTGTTGAACATCCGGATTATTTC
TGCACTCTCGTTGTTAACAACAGTTTTGAGCTTCTTATCCCACAGAACCTAACATAAAAA
CCAAAACTCATGACTAACTATGGG
GenBank Accession AL952281 [GenBank]
Graphic View Graphic view of gene At4g19880
Predicted Position of Insertion Chr4:10785033 - go to primer design
BLAST e Value 2e-154
Hit Clone Code (BAC ID) T16H5
Hit Gene Code At4g19880 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Glutathione S-transferase family protein
Insertion Classification CDSi
Confirmation Status unknown
Other FSTs Supporting this Hit BX530884 [GenBank] BX530883 [GenBank]

Gene hit At2g43330

 
Sequence (A. th genome BLAST matches underlined) 
>90-K016154-022-342-B12-8409
TGATCTGTAAATTTCCCGGACATGAAGCATTTACATTGAACATTTATTTACTCAATTACC
CTCAATTACTGAGATTAATTACATAAGCGCGCACTACCACAAAATCTTGCACGGGTTTAT
CAAACACTGTGTTCCGAATGATTCATCTTCTTCTTCTTCTTCTTCTCCTATCTGCATGTT
ATATGGGGGAGTGCGTTCTATGGGATCCTCCCCTCATAGTGAGCATGAATATGACAATCT
ACAAATATATGTTTGTGAAGGGAACCATTAATATTATCTATGGGATCTTCCCAGATATGG
AGACTTTTACAGGTGTAATTTCCGGTGCCCTTTTGTACATTAAGGATGATTTCGAAGTTG
TTAAGCAGAGCAGTTTCTTACAGGTATATAATGTTTCTATGGGAT
GenBank Accession CR396444 [GenBank]
Graphic View Graphic view of gene At2g43330
Predicted Position of Insertion Chr2:18001248 - go to primer design
BLAST e Value 4e-47
Hit Clone Code (BAC ID) T1O24
Hit Gene Code At2g43330 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation inositol transporter 1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37