SimpleSearch - Line and FST details
Line specific information
| Line ID | 342G06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N432814) |
| Segregation Analysis | 50:18:16 |
| Confirmed for Hit | At3g44060 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 81234, 81236, 81238 |
Gene hit At3g44060
| Sequence (A. th genome BLAST matches underlined) | >47-K016163-022-342-G06-8409 TGATCATGTGATTTCCTGGACATGAGCCATTTACAATTGAATATATGATTAGAATAAATA ATAATTTGTGTATTGGTGAATTCAAAATACTGGTTATATATTGTACAATACTATAATACT ATGGGATTCTCCCTATAGAGAGATACATATAAATGAAGATTTGTTCAGGGTTTTCTTCAT ACCGAGAGAACCAGAGTTTCAAGGTTTGGAGAATTCCCTATGGGATCCTCNCTATAGTGA GATANCTATNGNNNNGATTCNAGATTTTGTGTTTTCAGGCCAAGATGGAGAAGTAGACAG AGTTATTATATATTTTTTGTTATGATGAAAACGAAGAGGTCCCTACCCTTATTATAGGAA GACAGAGTACTTTTCATGTTTCATGAGAAAGCCCAACGCGAGGCATAGTCATATCGCATA TTGGTGATCTTCTATAACTAATGACAATGTATTTGCTGTAGAGTCCTGTAGAGTATGCCA AATTGCTAATTGTGCAAAACATACATGCTGAATCGGCGCAACCTATGTGTGGAGCATCTC TGCATGTTGTTAATTTGCCAGACATAATATGCCCCCGTCCCACGTTTGGCCTATGGGATC CTCCCTATAGTGAG |
| GenBank Accession | AL952357 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:15825172 - go to primer design |
| BLAST e Value | 5e-34 |
| Hit Clone Code (BAC ID) | F26G5 |
| Hit Gene Code | At3g44060 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | F-box/RNI-like superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g42595
| Sequence (A. th genome BLAST matches underlined) | >47-K016154-022-342-G06-8409 TATCCTGTAGATTTCCCGGACATGAAGCCATTTACAATTGAATATATCCTGACAAACCGA TGTCTTCGTCCAAATGTGTAACGATGCAGATCCTGAAGCATCAAGAGAAGATACTACTTT AATCACATGTCACAATCATACATATAAATGAAGATTTGTTCAGGGTTTTCTTCATACCGA GAGAACCAGAGTTTCAAGGTTTGGAGAATTCTCTATGGGATCCTCCCCTATAGTGAGANN NNNANNNNNNNCNTNNCNNCTTTTNTTTTTTANGTCATGTCTCCCACGAGTATCCATCCT ATTGTACAACTGACTGAATGATGCATTGAATTTGTCTACATATCTTCCTCGTGGAGTAGA GAAGATCTTGCAGGTTTCATTTGTAATACAAACACAATTTATATACATCCGTATATTGGT GATTATAGCTAACTAATGACAATGTATTTTCTGTAGAGTCGTGTAGAGTATGCCAAATTG CTAATTGTGCTAGACATACATGCCAATCAAGTACAAGTTATGTTTGGAGCATCTCTGCAT GTTGTTAATTTGAAAGACAAGATATGTTCGTGTCGCAGGTTTGATCTA |
| GenBank Accession | AL952356 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:16001826 - go to primer design |
| BLAST e Value | 2e-156 |
| Hit Clone Code (BAC ID) | F8D11 |
| Hit Gene Code | At1g42595 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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