SimpleSearch - Line and FST details
Line specific information
| Line ID | 343C11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N432867) |
| Segregation Analysis | 50:45:31 |
| Confirmed for Hit | At1g66440 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 8524, 11262, 85291, 85292, 85293, 85295, 85296 |
| Note |
Gene hit At3g45555
| Sequence (A. th genome BLAST matches underlined) | >83-K104615-0022-343-C11-8409 GAGCATTTACATTGAAATATCCTTTTAATATGTTGCTTTATGAATCATAAATTCTGTTTG GAATGCATGAAACGATATATAGAAGTGAGGCTCCTATGGGATCCTCCCTATAGTGAGACG AATTAATCAGGG |
| GenBank Accession | FR808300 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:16712916 - go to primer design |
| BLAST e Value | 1e-23 |
| Hit Clone Code (BAC ID) | F9K21 |
| Hit Gene Code | At3g45555 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RING/U-box protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 146A12 |
Gene hit At5g17500
| Sequence (A. th genome BLAST matches underlined) | >83-K016164-022-343-C11-8409 TGATCTGTNATTTCCCGGACTGAAGCCATTTACATTGAATATATCCTGGATATATTCATC TACTTGTTGATTTAAGCTAAGAGAGAATAAATGTCTAATTAGGATTAGTGAATTGTTTAG TTATTCTACGTTTCCCTTCATAAGCTTCGTCCTCTGTGTTTTTATGGCAGAGAGAAGAAA CAATTCTCCGAAACGATGACGATTTTGTATTGCCTTACTTCTTCACAAAGTTAACTCAAA ACTTTTTAGGTTAGAACCCTAAAGCATTAATATTACCCTATGGGACTCCCTTAATAGTGA GANCTCNCNNCACNNTNNGTNTTCTATTCTTTACTTTTTAATTACCCAAAGGGATCCTAC CTTGATTGAGGATTTTGCGAAAGCTATATTTAAAATCTTTGAACAGTAGTTTTTTTAAGT ATCTGATAGGTTCCCTA |
| GenBank Accession | AL952427 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:5769722 - go to primer design |
| BLAST e Value | 2e-119 |
| Hit Clone Code (BAC ID) | K3M16 |
| Hit Gene Code | At5g17500 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Glycosyl hydrolase superfamily protein |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
Gene hit At1g66440
| Sequence (A. th genome BLAST matches underlined) | >83-K016155-022-343-C11-8409 TATCCTGAAATTTCCCGGACCGAAGCCATTTAAATTGAATATATCCTGATCAGCAATTAT AGGAAGAAGAGAAGGCGAGCTATGGGATCCTCCCTATAGTGAGAAAGAAAGAATGAGCAC ATGATTATCATGCTTATACCTCACCTTCTGAGGTATAGCAGCACACTTGAAACACAAAGC AAAGACACACTGAACGCAATTAAATGTTTCATGTGTGACATAACGGCTTGACTCTTTGCA AACACTACATGTTCTCCAATCTCCTGGTTTAGATGTTAGGAATAAAGGATGCCTATGACT TCCATGAACTAATGGTTCAGAAATTGTCCCGCACCGCACATGTAGATTAAAACGACATCC TTCTCTGTGGCACTCATAGAAGAAACCGGTGGTGAACAACCATGGGCAAGCTGAACATAA ATCATGAGTGTTGGCTTTATCGGTCGCGGAAGTCACTAAAGTGAGCAGATGTGGATGTAT CGGGTGTTGTATTTTGCGAGAAAAATTTGCACATTCTTCGTGGAGAATGAAATTGCATTC CATACAAGAGTAGAATTTACCAAAATAGATTGGCGTGATGCATGCTTGACACAGCTTACT CTCGACGAAGTCTCTGCCCGTGTTATCATCAAGTCTCAGATAATGNTGTTGATGGCTGAA ATGTTGTATGATTCCAAGACTTATCCTCAAAAATGGATTAACTCCTATTTCATCAATAGC TCCTGGTTTCCCTCAAGATCTTCACCATCCCAAACATTAATCGGGGATGCCCCATTTGGA ATGAACCACATACGTACAAACGCTGGTTTCGGAAGAATAACCCCCACAA |
| GenBank Accession | AL952426 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:24784053 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T27F4 |
| Hit Gene Code | At1g66440 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Cysteine/Histidine-rich C1 domain family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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