SimpleSearch - Line and FST details
Line specific information
| Line ID | 343D11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N432879) |
| Segregation Analysis | 50:46:44 |
| Confirmed for Hit | At2g43890 At3g04070 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 7349, 7367, 10903, 10915, 10916, 92378, 92379 |
Gene hit At2g43890
| Sequence (A. th genome BLAST matches underlined) | >84-K104615-0022-343-D11-8409 CCGGACATGAGCATTTACAATTGAATATGTCCTAAACAGGTAAATTTCTTAATCGAAATT GAAACCTATGGGATCCTCCCTATAGTGAGTCGTATTACTCAG |
| GenBank Accession | FR808318 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:18178071 - go to primer design |
| BLAST e Value | 4e-14 |
| Hit Clone Code (BAC ID) | F6E13 |
| Hit Gene Code | At2g43890 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Pectin lyase-like superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g04070
| Sequence (A. th genome BLAST matches underlined) | >84-K016164-022-343-D11-8409 TGATCATGTAATTTCCNGGACATGAGCATTTACAATTGATATGTCCTAAACAAGTAAATT TCTTAATCGAAGTTGAAGCTATGGGATCCTTCTTATAGTGAGANNCCGCGGTCTACGAAT GGTTCGTTGTCTTTTTCCTCATGATCTTGATTGCTTGTCACCAAAGAAAGATCAAGTAAT GACAATGAGTCGTGAGAAGTTTTGTAATCGTTCAAGACACAAAAGAGTCAAAACACAGTA CTTGCAGGAATGTAACNTACATTCTGATAGATCCATGATAAGGAAGCGTTAAAAATAAGT GGNAATTGTGAAAACCACCAAGAATAAAAATGGGTTATTCCAGCCCTCTAATAACCGGTT TATGCCTTCCGGTTAAAATAGTTGGCGATACCAAAAATACAAATTTTGAAACTGAAATCA CCATAATAATAGTCTATATCTTTAGTAGTAGCAAAAACTTACTCTCATCGAATATTCTTT AGAATTCCTATCTCCAAAATTATTATTAACTTCGCTACCACCGCTCCTATGGGATCCTC |
| GenBank Accession | AL952448 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:1061957 - go to primer design |
| BLAST e Value | 1e-108 |
| Hit Clone Code (BAC ID) | T11I18 |
| Hit Gene Code | At3g04070 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | NAC domain containing protein 47 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At4g33680
| Sequence (A. th genome BLAST matches underlined) | >84-K016155-022-343-D11-8409 GATCATGAAATTTCCCGGACATGAAGCCTTTACAATGACTATGTATGGGATCCTCCCTAT CGTTGAGCGAAATTGAAACCTAGAGATTACATGCCTGTGTGAATAGTATAGCAAACAAAA AAACTATGCTACCAGAATAATTTTCATTGTTAGATTACAGAGAAGATCTCGTTTAATAAT CCAAATACTCCAAAACAGAAAATATGTTATACATTTTTGTCAAAATGAACGAAATAATAC ATGTTAGGGCAGTGTTAGTAAAATCAGTTTAAAATATGCTATGGGATCCTCCCTATAGTG AG |
| GenBank Accession | AL952447 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:16173459 - go to primer design |
| BLAST e Value | 4e-93 |
| Hit Clone Code (BAC ID) | T16L1 |
| Hit Gene Code | At4g33680 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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